Gene detail

Detailed information of ANN24174-RA in Montipora grisea

Genomic Location: Scaffold_61__1_contigs__length_416030:15424...16125
NR annotation: NCC03932.1, ribulose-phosphate 3-epimerase [Pseudomonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P51012	Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus OX=1061 GN=rpe PE=3 SV=2
P0AG09	Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 OX=83334 GN=rpe PE=3 SV=1
P0AG08	Ribulose-phosphate 3-epimerase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rpe PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002999 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00834 all species →	Ribul_P_3_epim	Ribulose-phosphate 3 epimerase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026019 all species →	Family	Ribulose-phosphate 3-epimerase	Interproscan
IPR000056 all species →	Family	Ribulose-phosphate 3-epimerase-like	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR011060 all species →	Homologous_superfamily	Ribulose-phosphate binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11749 all species →	RIBULOSE-5-PHOSPHATE-3-EPIMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004750 all species →	Molecular Function	D-ribulose-phosphate 3-epimerase activity	Interproscan
GO:0006098 all species →	Biological Process	pentose-phosphate shunt	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016857 all species →	Molecular Function	racemase and epimerase activity, acting on carbohydrates and derivatives	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009052 all species →	Biological Process	pentose-phosphate shunt, non-oxidative branch	Interproscan
GO:0044262 all species →	Biological Process	obsolete cellular carbohydrate metabolic process	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01783	rpe, RPE; ribulose-phosphate 3-epimerase	EC:5.1.3.1	Carbon fixation in photosynthetic organisms	ko00710	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.