Gene detail

Detailed information of ANN24198-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:36834300...36838141
NR annotation: XP_029206777.2, uncharacterized protein LOC114970490 [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24198-RA

ATGGATGATGAAGAGAAGACCTCGTATGGATATTCTGCTCTCCATACCGCTGTGATTTCCCGGGATCTCAAAGCCGTTAGAGCTCTGACAACAACGACAACTGTCTCTGAAAGATGTGACCTCGATTCAAAGGACGCCATGGGCTTCACTGCCCTTCACTTGGCCACTCTACAGGGAAACAAAGAGCTTGTGGAGATGTTGGTGCTAGCGGGAAGTGACATCAACAGTCGGACAAAAGAGGGAATGACTTCACTTCACATTAGCAGTGAACACACTGGTGCAGAAGGCATTGTATCCACCCTAGCAACTGAGTCGTGCGACGTCAATGCACGGAATAAACTAGGAAGAACCGCGCTTCACCTCGCATCCAAACTAGGAAACCTTCAGAATCTCAAAATGCTTCTTGATGCTGGCTGCGACAGAAATATTAAAGACAAGCTTGGATTCACGGCAGTTGGTTTGGCTTTCAAGTATAACCAGAAAGGAAGCGCGGACATTTTACTGCATTACAAACCACGACGGAATCGATGCTCTTCCAAAGAAAGCCTTCTGGATGAAAACAATAATGGGCCAGCAAAATGTGGAGAAAAGGAAAGCAGATTGCAGACAGATGTCACGCACTGTCTTGGTGCGGAAGCTTGTCCGAAATTGCTGAACAGTACGAATTGCTTTAATTCCAAAATGAGGAAGAATTCTTTCCGGAAACTTTGCGATGAGACGTTCTTGAAACTCACGGAGAGACTGGCCAAAGGAAAAGCACTGCCTAAGAGTATTTACTATCTTATATTAGCCACGGTGAAATGGAAGAGAAATAAATTAGATGGATTAGCCACTTCGAGAAGAACACGATACTTTGGGACTTTACTTGAGAAAGAAATGTTAACTTTGATCTTGAGTTCTACTTCGCCCTCCCAGTCAGTTACTTTTCCTTTTCGCCCTGTTACGGATCCAGATGTACCCCTAGGACAACTATGTTTGTGTGAATTGAAAACAAGTTTTTACAAGAGAGGTGATTCGTACAATTTGCAGTCAGACTTGTTAGTGAAACTACTACAGGATTTGAAAGATTCTCTTGTTCGTTCAACAACCCCGTCATCATCTATTCCAGTGGAACGTCGGAATTTGCTTCTGTCTTTGATCAAATCCAAAGACAATGAACCTGCTCTTGTAGACTTGAAAACGTTTACGCAAATGCTGAGTAAAGTTTGTAATAGCAGGAACGATAACTCGCGTTTGCAGACGTTTTTGGACAGTGATGCTGAAGAAAGTCTTTCAAAACTTGAGAAAAGCCTCTCCATTAGTGATTCACGGGAAGACAAGGACAAATTGAAAGATAACGAAGGCAAATTTGTAGCATCATATAAAATGGAAGACTATCTCTGGTGTTTAGATCACGTGATTAACAAGAGAAGTACTCCAGCGTCATTTGTAGAAGATTTGTTAGAATTTTTGGTTCAGAATTCAGACATCTTCATCTCATGTCTAAAGTACAGAGATTCCATGTTTGGTACGATATTGAACAAATGTCTGACAAGGGAGAACATCTGGACGGCGGATAAAATTGCCAGGCTTTTCCTCCAGGTCTGTATTGCCTTATCGACTGAGCGGCAGCTATTGCTTAAATGTGCAGGAGCTGTCATGAAGCAGGGTCTCTTACACCAACACTGCAATGCTGTATCTCTTGGGACTTGCATTTTAGTGAGAATGGGACTTCTCAAAGGGGAACATGATGTTGACATCGTTTTGGAACTTGAGGGACCCCTTACAGCCCTGGAATATGTATTCACAGAGGAATATTTCCCCAGAAATCTCGCAGGCATCTTTGCATCTTTCCTTTGCAAATCTAGTCCTAAATTGTTTGGACTGGATCAGCTGCGCCTTCGAGCACTTGCGTCTGCGGTTACCAAAGAAGTTCTTCCTACTTCGTCTGAGGAAGCTGAAAGTGACACAGGAAAGAGCTTCAAGCGGATTTGTGATATCGTAGCGCTAGAAGAAGACTGGGAATTACTTTTAAAGTGTTTCGACAAGTTATTTGTGTGCGTTTTTGTAACGCTGAAATGCAGAGTATTGCAAATTGGTCAAGACCTTCTTATTTATCTTGGTTTGTTGAAAAGCGAATTCTGCATTGAGATTGTTAGGAACCTTAAGTGCGCTTTAAGACTGCTTCATCATACGATGAAGAAAAACTATTTTCCACCCGAACTAAAACAAATGTTTTTATGTTTCCTCCAAAAGCCCAATCCTACTTTTTGCTCGTGTTGCGCAGAGGTGGAAGAGATCTTGGGTACATTACTCGAAAACCCACCTGGTCTGTAA

Transcript

ANN24198-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009525 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07834 all species →	RanGAP1_C	RanGAP1 C-terminal domain	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR036720 all species →	Homologous_superfamily	Ran-GTPase activating protein 1, C-terminal domain superfamily	Interproscan
IPR009109 all species →	Domain	Ran-GTPase activating protein 1, C-terminal	Interproscan
IPR051070 all species →	Family	NF-kappa-B Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680 all species →	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0007253 all species →	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059 all species →	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356 all species →	Biological Process	cellular response to tumor necrosis factor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24198-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.