Gene detail

Detailed information of ANN24211-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:37069137...37078242
NR annotation: CAH3039033.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24211-RA

ATGCATTTTTTATCGGTCACTTCACGAAATTTGTTTTCCTTTGGTTGTAAGAAAGCTTTTCGAGTGATTTCAGGGTCCTTTATCTCAAGTTCAAGTTTTGTGCAAGTCAGAGGATTTTGCGTGTCACAACATCCACGTGGAACAAACAACAAAATGGCGGACGGTAATGCACTTGTGGAAGAGTATTCTAAACGCGCTAAGTTAGCGGAGGATGAAATTGCGAGTTTGAAGAGGAAAATCGAAGCTCTTCAGAACCAGTATGGGTCTTGTTCGGAGCCGGAAGCCGAAGAAACCAGTGACCCGGAATTGGAAAAGCTTCTCACAGAGAACAGCAAACTAAAATACCGAGTGGAAACACTCAAGCGTAGCATCAAGGAGGAGAAGGCCAACTCCAAACGTGTCATGACCAACTGTCAATTCACACTCAATGAGTTATTTAGAAAGGCAATAGAATCAGCCTTTCCTGATCTTCCAGATGCTCCTGTGATCGTACAAGCCTCTCAAGGTGAAAGGTTTGGAGACTACCAGTGCAACAGTGCCATGGCAATTAACCAGATGTTGAAAGGCAAGGGTATCAAAAGTAATCCTCGTGAAATTGCTGCATCAATTGTAGCAAATGTACCACAGAATGATCTGTTACAAAAGGTTGAGGTAGCAGGAGCTGGTTTTATCAACATTTCTCTCAGCCACAACTATGTGTTTTCCTTGTTAAAAGACATCATTACAAATGGCGTCCAACCGCCTGCTGCTCCTGTCAAAAGACGATGTGTTGTGGACTTCTCTTCACCAAACATTGCCAAGGAAATGCATGTTGGACATCTCAGGTCCACCATTATTGGTGAAAGTCTTTGCCGACTTCTGGAATATGTTGGTCATGATGTGCTACGTATCAACCACATTGGAGACTGGGGTACTCAGTTTGGCATGCTGATAGCTCATCTGCAGGACAAATTTCCAAATTACCTACAAGTTTCTCCACCCATCAGTGATCTACAGGCTTTCTACAAGGAATCCAAGAAACGTTTTGATGGAGATGAAGCATTCAAAAAGGTGGCTTATGAAAAAGTAGTGGAATTACAAGGAGGCAGTTCTAATGTTAGGAAAGCATGGAATCTCATCTGTGATGTGTCCAGAAAAGAATTTGACAACATTTACACTCGACTGGATGTAACTCTGATAGAGAGGGGAGAATCATTCTACCAAGATATGATGCCTGGTGTTGTTGCAGAACTTGAGAGAATAGGGAAAGTGATAGAAGACGAAGGTCGCAAGGTTGTGTTTGTTGAAGGGCAGAAGGTTCCGCTTACTGTTGTCAAATCCGATGGAGGCTTCACTTACGACACGTCAGATCTCGCCGCAATCAAGCAGAGGATTGATAATGAAAATGGGGACTGGCTTATTTATGTCACTGATGCTGGCCAGGGCGAACACTTTAAACTAATCTTTGGAGCTGCAAGGGAAGCTGGTTGGTACGATCCTAAGACGACACGTGTCGATCATGTTGGATTTGGAGTGGTTCTGGGGGAAGACAAAAAGAAGTTCAAAACCAGATCTGGCGATACGGTTCGTCTTGTTGATCTTCTTGATGAAGGACTTAAAAGAGCGTTGGACAAGCTGAAGGAAAAAGAACGAGACAAGGTTCTTAACGCTGAGGAGTTGAGCGCTGCTCAGGAATCCGTGGCTTATGGCTGCGTCAAGTACGCGGATCTTTCTCACAACAGAGTTAATGACTACGTGTTTTCATTTGACAAGCTGTCTTGGGCATACCAAGTTCATTTAAAGAACTACTCTCTCGATTTTCCATCTCATCAGATGTTAGATGACAAAGGAAACACCGCCGTGTATTTGCTTTACGCCTATACTCGCATCAGATCTATCATGCGCACGGCCAACATCGACCGCGAGAGCCTGGAGTCATGTTTAGCGAACACCGAAATCTCGCTGGACCATCCGAAGGAGTGGAAACTGGGGAAGTGCATCGTGCGCTTCCCAGAGATCCTTTCGCGCGTGCTGGATGATCTGATGATGCACACGTTGTGTGAATTCATGTACGAGATGGCCACCACGCTAACAGAGTTCTACGACAACTGTTACTGCGTGGAGAAAGATCGCAAGACAGGCGAGGTGCTTAAGGTAGACATGGGCCGCATGCTTCTGCTCGAGGCCACCGCGCGTGTGATGGAAACTGCTTTTTACATCTTGGGAATCAAACCTGTTACGAAAATGTGA

Transcript

ANN24211-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1S4	Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis OX=8364 GN=rars1 PE=2 SV=1
A7YW98	Arginine--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=RARS1 PE=2 SV=1
P40329	Arginine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Rars1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05746 all species →	DALR_1	DALR anticodon binding domain	Domain	Interproscan
PF00750 all species →	tRNA-synt_1d	tRNA synthetases class I (R)	Family	Interproscan
PF03485 all species →	Arg_tRNA_synt_N	Arginyl tRNA synthetase N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035684 all species →	Domain	Arginyl-tRNA synthetase, catalytic core domain	Interproscan
IPR008909 all species →	Domain	DALR anticodon binding	Interproscan
IPR036695 all species →	Homologous_superfamily	Arginyl tRNA synthetase N-terminal domain superfamily	Interproscan
IPR005148 all species →	Domain	Arginyl tRNA synthetase N-terminal domain	Interproscan
IPR001278 all species →	Family	Arginine-tRNA ligase	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11956 all species →	ARGINYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004814 all species →	Molecular Function	arginine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006420 all species →	Biological Process	arginyl-tRNA aminoacylation	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01887	RARS, argS; arginyl-tRNA synthetase	EC:6.1.1.19	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.