Gene detail

Detailed information of ANN24216-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:37154640...37158277
NR annotation: CAH3039020.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P47835	Small ribosomal subunit protein uS3B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1
Q3T169	Small ribosomal subunit protein uS3 OS=Bos taurus OX=9913 GN=RPS3 PE=2 SV=1
P23396	Small ribosomal subunit protein uS3 OS=Homo sapiens OX=9606 GN=RPS3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007255 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07650 all species →	KH_2	KH domain	Domain	Interproscan
PF00189 all species →	Ribosomal_S3_C	Ribosomal protein S3, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009019 all species →	Homologous_superfamily	K homology domain superfamily, prokaryotic type	Interproscan
IPR036419 all species →	Homologous_superfamily	Ribosomal protein S3, C-terminal domain superfamily	Interproscan
IPR015946 all species →	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan
IPR005703 all species →	Family	Small ribosomal subunit protein uS3, eukaryotic/archaeal	Interproscan
IPR004044 all species →	Domain	K Homology domain, type 2	Interproscan
IPR001351 all species →	Domain	Small ribosomal subunit protein uS3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11760 all species →	30S/40S RIBOSOMAL PROTEIN S3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0022627 all species →	Cellular Component	cytosolic small ribosomal subunit	Interproscan
GO:2001235 all species →	Biological Process	positive regulation of apoptotic signaling pathway	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02985	RP-S3e, RPS3; small subunit ribosomal protein S3e	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.