Gene detail

Detailed information of ANN24216-RA in Montipora grisea

Genomic Location: Scaffold_61__1_contigs__length_416030:296286...300091
NR annotation: CAE7405716.1, gyrB [Symbiodinium microadriaticum]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24216-RA

ATGCCTCGGACAATTCGGCGCTCTACGTTCTCATGCCCATGCGGGTGTGAGCGGCGCTCTGGAGACCCGGTGACCAGCTCGGGCTTGAACCCACAAGCGGCTGCTGTGCAGGACCAGCAGCCATTGACGACGGCCGGTATCCAGCCGGCCTGCTGGGTGCGGCGCCTGTCGCTGTCCCGTTTTCGCAGCTATGCCGCGGCTGCCGTCGAGGCCGATGGCCGACCGGTGGTGCTGACCGGCGAGAACGGCGCCGGCAAGACCAACCTGCTGGAAGCCGTGTCCTTCCTGGCGCCCGGTCGTGGGTTGCGGCGCGCGCGCCTGTCCGAGGTGCTGCGTCACGGTCCGGCGGAAAGCGCCGCTAACGATTCCGCGGCCGCGGCCTGGGCGGTCGCCGCCGAGGTCGTTACGCCCGACGGTCCGCGCGACCTTGGGACGGGCCTCGATCCGGACGCGGCGCGCAACGGTCGGGATCGCCGGGTGGTCAAGGTCGACGGCGACTTCGTGCGTGGCCAGGCGAGCCTCGGCGAGATCCTGGGTTTGGTCTGGCTGACGCCGCAGATGGACGGTCTGTTTCGCGAGTCTGCCGGCACCCGTCGACGCTTTCTCGACCGCCTCGTGTTTTCGTTCGATCCGGCCCATGCTGGACGCACCTCGGCCTACGAACACGCCCTGCGCGAACGGGCGCGCCTTTTGAAGACCGGGCGCGCCGATGCCGCCTGGCTCGATGCGCTGGAGGCCACCATGGCCGAGAAGGCGGTGGCCATAGCGGCGTCGCGTCTCGCCCTTACGGCCGAACTGAACGCCGAGTGCGAGGCGGCCGAGGGACCATTCCCGCAGGCCGTCTTGGCGCTCGAGGGCGAAGTCGAGGGCTGGCTGCAGGATGGGCCGGCGCTGGCTGCGGAAGATGCGCTGCGCGAGCGTCTCGCCGCGAGCCGGGCGCGCGACGCCGAAAGCGGCGGCGCCGCGGCGGGACCGCACCGCAGTGACCTGCTGGTGCGCCACCGGCCCAAGGATCAGGCGGCGGCGCTCTGTTCGACCGGCGAGCAGAAGGCGCTCCTGATCGCCATGGTCTTGGCCCATGCCCGGCTGGTGGCACGCGATCGCGGCGCCCCGCCCCTGCTGCTGCTCGACGAGGTGGTGGCCCATCTCGACGAAGCGCGCCGGGCGGCTCTCTTCGAAGCTCTGCTCGACCTCAAGGCGCAGACCTGGATGACCGGGACCGATGTCCTGCTGTTCGAGGCGCTGGGCGCGCGGGCGCAGTTTTTTATGGTGAAGGACGGTGGACCCGGTGCCGGCAGCGACGAGTACGGCGCCGGATCGATCAAGGTGCTGCGCGGACTGGAAGCGGTGCGCCGGCGTCCCGGTATGTACATCGGCGACACCGACGACGGCTCAGGCCTGCACCACATGATCTACGAGGTGGTCGACAACTCGATCGACGAGGCCCTGGCCGGCCACTGCGACGCGGTCGAGGTGGTGCTGAACGGCGACGGCTCGGTCACGGTGCGCGACAACGGGCGCGGCATCCCGGTCGACATTCATGCCGAGGAAGGCGTGTCGGCGGCCGAGGTCATCATGACCCAGCTGCATGCCGGCGGGAAATTCGATCAGAACTCCTACAAGGTCTCCGGCGGTTTGCACGGCGTCGGCGTCTCGGTGGTCAACGCCCTATCGGAACGGCTCGACCTGCGCATCTGGCGCGGCGGGCAGGAGCACTTCATGCGCTTCGCCCACGGCGAGGCCGAGGCGCCCCTGGACGTGGTCGGCGAGGCCGCCGGCCGCAGCGGCACCGAGATCACCTTCCTGCCTTCGAAGGAGACCTTCTCGCAGACCGAGTTCGACCTGCCGACCCTGGAACATCGCCTGCGCGAGCTCGCCTTCCTCAACTCGGGGGTCAAGCTGCTGCTGAGCGACGACCGGCACGCCGAGTCCAAGACCATCGAGCTGCACTACGAGGGCGGTCTCGAGGCCTTCGTGCGCTATCTCGACCGGACCAAGACCTCGTTTATCGATCCGCCGGTCAAGATCGAGGCCGAGCGCGACGGTCTCACGGTCGACATCGCCATGCAGTGGACCGACAGCTACCACGAGACGGTACTCTGCTATACCAACAACATCCCGCAGCGCGACGGCGGCACGCATCTGGCGGGCTTCCGCGCGGCGCTGACGCGGCAGATCAACAACTACGCGCTGCAGTCCGGACTCTCTAAGAAAGAGAAGGTGCAATTGACCGGCGAGGACGCGCGCGAGGGACTGTCCTGCGTGCTCTCGGTCAAGGTTCCCGACCCCAAGTTCTCCAGCCAGACCAAGGACAAGCTGGTGTCTTCGGAGGTCCGGCCGGTGGTCGAGAGCGTGGTCAACGAGCGTCTCGGGCAGTACTTCGAGGAGCATCCGGCGGAGGCCAAGAAGGTGGTCTCGAAGGTGGTCGAGGCCGCCGCCGCGCGCGAGGCGGCGCGCAAGGCCCGCGAGCTGACCCGGCGCAAGGGCGCGCTCGACGTGGCATCGCTGCCGGGCAAGCTGTCCGACTGCCAGGAACGCGATCCGGCGCTGTCGGAGATCTTCATCGTCGAGGGCGATTCGGCCGGCGGCACGGCCAAGCAGGGGCGCGACCGCAAGACCCAGGCGATCCTGCCGCTACGCGGCAAGATCCTGAACGTCGAGCGGGCGCGCTTCGACAAGATGCTGTCCTCGGCCGAAATCGGTACGCTGATCACCGCGCTCGGCACCGGCATCGGACACGGCGAGTTCGACATCTCGAAGCTGCGCTACCACAAGATCATCATCATGACGGATGCCGACGTCGACGGGTCGCACATCCGCACGCTGCTGCTGACCTTCTTCTTCCGGCAGATGCGCGAGATCATCGAGGGCGGCTATCTCTATATCGCCCAACCGCCGCTCTATCGGGCCAAGAAAGGTTCCTCGCAGGTCTACCTGAAGGAGGACCGCTCGCTAGAGCGTTACCTGATCACCGCCGGCGCCGACGATGCGGTGCTGGAACGTGCCGACGGCAGCCAGGTCGCCGGCGAGCACCTGGTCGAGCTGGTCGAGCAGGCGGTCAAGGCCAAGCACATGATCGAACCCCTGGTGCGCCGGGTCGGCAACGCCGACGTGGTCGAGCAGGCGGCGATCGCCGGAGCGCTCAATCCCGAGGTGATCACCGATCAGGCGCGCGCCGAAGCGGCCGCCGCTTATATCGCCAAGCGGCTCGACGCCCTGGCGCCGCAGTACGAGAAGGGTTGGGAAGGTCATGCCTCGCATGACACCGGCCTGTCGTTCCGGCGCAGCCTGCGCGGTGTGACCGAACGGCGGGTCATCGACGGTACCATGATGCGGTCCAGCGAAGCGCGCCGGCTCGACGAAATGGCCGAGGCGCTGCAACGGACCTACGTGAACCACGCCGAGTTGCGCAGCAAGGATCAGGTGCAAGTGATCGGTGGCCCGATCGCGCTGGCCGACGCGGTCTTCGCGCTCGGGCGCAAGGGCGTGCAGATCTCACGCTACAAGGGCCTCGGCGAGATGAATGCCGAACAGCTCTGGGAAACCACGCTCGATCCCAACGTGCGCTCGCTGCTTCAGGTGCGCGCGCCGCATGCCCAGGAAGCCGACGACATCTTCTCGACCCTGATGGGCGATGTGGTCGAGCCGCGGCGCGAATTCATCCAGGCACATGCCCTGGAAGTCGCCAATCTCGACGTTTGA

Transcript

ANN24216-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0CAX1	DNA gyrase subunit B OS=Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) OX=190650 GN=gyrB PE=3 SV=1
B8GXQ0	DNA gyrase subunit B OS=Caulobacter vibrioides (strain NA1000 / CB15N) OX=565050 GN=gyrB PE=2 SV=1
Q1RHT8	DNA gyrase subunit B OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=gyrB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010595 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02518 all species →	HATPase_c	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF01751 all species →	Toprim	Toprim domain	Family	Interproscan
PF18053 all species →	GyrB_insert	DNA gyrase B subunit insert domain	Domain	Interproscan
PF02463 all species →	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan
PF00986 all species →	DNA_gyraseB_C	DNA gyrase B subunit, carboxyl terminus	Family	Interproscan
PF00204 all species →	DNA_gyraseB	DNA gyrase B	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013759 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, subunit B, C-terminal	Interproscan
IPR013760 all species →	Homologous_superfamily	DNA topoisomerase, type IIA-like domain superfamily	Interproscan
IPR011557 all species →	Family	DNA gyrase, subunit B	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR006171 all species →	Domain	TOPRIM domain	Interproscan
IPR014721 all species →	Homologous_superfamily	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR018078 all species →	Conserved_site	DNA-binding, RecF, conserved site	Interproscan
IPR020568 all species →	Homologous_superfamily	Ribosomal protein uS5 domain 2-type superfamily	Interproscan
IPR042174 all species →	Homologous_superfamily	DNA-binding RecF, domain 2	Interproscan
IPR001241 all species →	Family	DNA topoisomerase, type IIA	Interproscan
IPR000565 all species →	Family	DNA topoisomerase, type IIA, subunit B	Interproscan
IPR034160 all species →	Domain	DNA gyrase subunit B, TOPRIM domain	Interproscan
IPR041423 all species →	Domain	DNA gyrase subunit B insert domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003395 all species →	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR001238 all species →	Family	DNA-binding, RecF	Interproscan
IPR002288 all species →	Domain	DNA gyrase B subunit, C-terminal	Interproscan
IPR018522 all species →	Conserved_site	DNA topoisomerase, type IIA, conserved site	Interproscan
IPR013506 all species →	Domain	DNA topoisomerase, type IIA, subunit B, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45866 all species →	DNA GYRASE/TOPOISOMERASE SUBUNIT B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24216-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.