Gene detail

Detailed information of ANN24277-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:38275539...38295652
NR annotation: XP_020610142.1, RNA-binding protein 26-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN24277-RA

ATGCAAATCAAAAGCGTGGAAGCCTTAAAGTCCTGGCTGACAACTCGTTTGGAATCAGTTTGTGATGCTGATCCAGCTGCCCTGGCCAAATATGTTGTTGCATTGGTGAAAAAGGACAAACCTGTGCAGGAACTGAAGGACATTTGTATCGATCAGTTGGAAGTTTTTCTTTCTGATGGTGTCATCGACGACAACAAAGGGAAAAAATTGCTAGAAGAAAAGAGTGGATGTTTTGGAAGCCATTTGAGACTGAAAATCAAGATGACAGATGCACTCGAAAGAGACATGGAAGCCAAGTTTGAGCAAATTTTGAAGGAAATCTTGCTGGAGTTAGAAGATAAAGGTCGCAAAATAACCTTGAAAGATGAACAGAGAAAAGCGGTGAAACAACTGTATGGAAAGAAAGACTTGGTGGCAGTTTTACTGACGGCTTTCGGAAAGAGTCTTATCTTCCAGTTACTGGTGTTATTAGAAAATAGAAATCGCAATGGCCACACTCAAACTGCTTCTGTGCTAGTAATTTGCCCTCTTACTAGCATTATTAACGACCAAATTTTTGAAGTGGAGAAAACGGCCAACTTTGTGAATGTGCTGTTTGAAGCATTAATGAACTGTTCATACATACCTCAGACATTAGTGGAACCAACTGTTGCACCCATCCCTAGCCCTGCACCTCCGTTAGTACTTCCACCACAACCGGTGCCTACCTCAGCCAAACCACAAGAAAAACCAAGGAAAACCTCAGTATCAGAGGATGTTTTAACCACGCGAGTGCTGGCAGAGCCCGATGATGATGACAGAGATTTTAAAAGAACTAGAAGAACAACAGACTCCAGTGAACGGAGCATTAGTGGAATAAGCTCAGTGGTATCAAACAGTGGTGACAGGTCACGCAAACGAAGAGCTGATGAGGACGTAAGCAGAGGCGACTTTTCAAAGGTTCCAAAAGAGGAACATGGAGGTATAAGAAGGGAGGATTCTGAACCTCGAGAGGACCCTAGAAATGACAATGCCGTATACCCTATTCCAAGTGCGTTGCATCGAGACAGGGGTGTGAAGCATGGCCCAGATGGTCAGGATGTTTTGTTGCGCCCCGGATTTCACCCTCACGATGATCGCAGGGGTAGACGTGGAAGCCCACCAAGAGATCACAGAGGAGGAAGAATGGGACGGGGACGTATGCGTGACAGATACAGGGATGACCGTCTGCGTCATGAAAGAAGGGACGAGAGAGACAGGGGTGGTGCTAGAAAGTCACGCTGTCGTGACTATGATGAAAAAGGATTTTGCATGCGTGGGGAGCTCTGTCCTTTCGACCATGGAAATGACCCAGTGGTAGTTCAAGACGTGCTTCCCCCTGGGATGTTAGGATTTCCCACATCCACAGGACCTTCCTTCCTCCCAGATGGCCAACCAATGCCTGGGGCAACAATACCAGGAAATGCTGCTCCTATGCCTGGGAATTATCCACCTCCGAACTCCCAACCCCCACCCCCTGGGACCTCGGGGACATTACCTAATGATGCTCCAAAATCGCAAGCAAATCAGAAAGGTGCTGATGTAACTGTATCTGTAACTGGTCCACGACCGCCAGCCCCACCTGGGATGGTGCCTCAGCGCAGCCAAGCACCAGTCCTACCACCCACAGTTCATATGATTCAGCAACCTATGCTCAGGGGTCAAGCACCCCGCCCACCCCGCCCTCCCTTTGGGAATCCATTTGAAGATTCTTACAATCCCGAACAACCTCAGTTTGAAAGGACTCCTGTGTGGATGAGACTTGGCAATGGCCGTCCTCCCCACCTTCTCCCCCCTCCGGGACCTTTTCACCCTGCCATGGGTTTGCGATCCAGGGAGCTATTGGCTGTTAGTCCAAATCCAGCTCAACTTACTGTACAAGTTTCAGGAATTTCAGCTCCTGGTCCCACAGTACCAAGCATGCCTGACAGAATAGTCATACACTCAGATCCAAAGAACAACGCCCCTGCGCTGCCTCAAGAAAAGCTTCCCCCACCACCAAAACAGCCGGCAGCTCCACCTCAGCAGAGTGTGGTGCAAGATACTGCCCCTGAAAACCATGTGGCTCCTGTCAAGTCTCGGCTGAGTTTTCCAAAGAAGTTGAGTGATACACTGGAGTTGAAAAAGATCCCTCGTGACCTGAACAACATTGCCAAGTTGAATGAACATTTTCAAAGATTTGGTGCTATCACTAACATTCAGGTTTGTGCCTTTGGAGATCCTGAAGCAGCTCTGGTTCAGTTCTCACATCACAGTGAGGCTAAATCTGCATATTCATGCCCTGATGCAGTGCTTGGTAACCGGTTTATCAGGGTGTTTTGGCACAATCCTGACAGACATCAAAACAATAAAGATGGAAATTCAAATCAAGGAATAACATCAGGAAGCAGTAATTCAGGAACAACTCCAGCTGAGTCAACAGCAAAAGAGGAATCTAACAAGGCCACTCCTGAACCCAAAGCCAAACCAACCATGTTTCAAAGTGGAAAGACAACATTCTCAAAGACTCCAAAAGCTGTCCCTGTTCATACACCAACAGGCCCTTCAATGACTAAAAGACAACAAGAGCTTCACAAGCAGGAAGCAATGAAAAAGAAGCTTGAGATTCAAAAACAAAAGCAAGAACTGCTTAACAAGCAAATCAAAGAACAAAAGACTATAAAATCCTTAAGTTCAAATATTGAAGCATTGAAGAAAGAAGTTGAGTTAGCGGCCATGGCAGCAAAGTCCAAGGAAAGTCCCTCTCAAGCCAGGCAGATTGCCCAGAAGGCAATCCTTGATCAAGAACTTGATTTGATTACACAGCAAAACACTGGAGAGGACACAACAGAACTGAAGAAAAAGGTGGAAGAACTTAAGCAAGAGGCAAAATCTCTTGGGTTGTTGGATCCACCAACAAAAGGACGAGGAAGAGGGATCATGAGAGGGAGGGGTCGGGGAACACCAGTGAGAAGCAGACCTCTTCCAAGGACTACAAGGGTGTGGACACGGGACAGTGCATCCCTGGACCACCGGCCAAAACAGATTACTGTGGGAGAAATAACACAAGAACAGAAGGAGGATGTCTCAGAGCATTTTAGAGAATTTGGTATTGTTGACAGTGAGGAATATATCGAGGACAAGAAAATCCTTAACTTGACCTTTAGGACAAGAAAAGAAGCAGAAATTGCATACAACAAGGGCAAGACATTTAAGGGCAGAGCTCTCAAGATTTCCTGGTACCGTGCTCCTGCTCCCCCTGTATCCCCAGTAGCAGTGACAAAACCTACAACTCCTACTGTACTGAAGAAAGTGGAGGAAGAGTTTGGGCTGGATATTGATGCTGAATTGGGAAAGCATGAGTTTGATGCGGAGGCTGATGAGGCATTGCTTCTTGGTGAAGATTTTGATGAAGAAGAGGAAGAGGAAGATGAACGGTCATGGAAAAGATAG

Transcript

ANN24277-RA

Protein

Uniprot

Uniprot term	Description
Q5T8P6	RNA-binding protein 26 OS=Homo sapiens OX=9606 GN=RBM26 PE=1 SV=3
Q6NZN0	RNA-binding protein 26 OS=Mus musculus OX=10090 GN=Rbm26 PE=1 SV=2
Q2T9I5	RNA-binding protein 26 OS=Xenopus laevis OX=8355 GN=rbm26 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045137	Family	RNA-binding protein 26/27	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14398	RNA RECOGNITION RRM/RNP DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan