Detailed information of ANN24280-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:38344293...38372957
NR annotation: XP_044177134.1, LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog B-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q498H0Sister chromatid cohesion protein PDS5 homolog B-A OS=Xenopus laevis OX=8355 GN=pds5b-a PE=1 SV=1
Q4VA53Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus OX=10090 GN=Pds5b PE=1 SV=1
Q5F3U9Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus OX=9031 GN=PDS5B PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003756 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20168
all species →		PDS5Sister chromatid cohesion protein PDS5 proteinRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR039776
all species →		FamilySister chromatid cohesion protein Pds5Interproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12663
all species →		ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0007064
all species →		Biological Processmitotic sister chromatid cohesionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11267PDS5; sister chromatid cohesion protein PDS5-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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