Genomic Location: Scaffold_312__1_contigs__length_118158:57145...58117
NR annotation: XP_047140011.1, 50S ribosomal protein L20-like [Hydra vulgaris]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN24344-RA |
| Transcript |
| ANN24344-RA |
| Protein |
| ANN24344-RA |
| UniProt accession | Description |
|---|---|
| B3CLK2 | Large ribosomal subunit protein bL20 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) OX=570417 GN=rplT PE=3 SV=1 |
| Q5U4Z8 | Large ribosomal subunit protein bL20m OS=Xenopus laevis OX=8355 GN=mrpl20 PE=2 SV=1 |
| Q73GR7 | Large ribosomal subunit protein bL20 OS=Wolbachia pipientis wMel OX=163164 GN=rplT PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0005277 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00453 all species → | Ribosomal_L20 | Ribosomal protein L20 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005813 all species → | Family | Large ribosomal subunit protein bL20 | Interproscan |
| IPR049946 all species → | Conserved_site | Large ribosomal subunit protein bL20, conserved site | Interproscan |
| IPR035566 all species → | Homologous_superfamily | Ribosomal protein bL20, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10986 all species → | 39S RIBOSOMAL PROTEIN L20 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0019843 all species → | Molecular Function | rRNA binding | Interproscan |
| GO:0000027 all species → | Biological Process | ribosomal large subunit assembly | Interproscan |
| GO:0005761 all species → | Cellular Component | mitochondrial ribosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02887 | RP-L20, MRPL20, rplT; large subunit ribosomal protein L20 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
