Gene detail

Detailed information of ANN24364-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:39567877...39575195
NR annotation: KAJ7356212.1, hypothetical protein OS493_025964 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24364-RA

ATGTCCTTCTGGGTCAGTCACTGGTTGACAATCTTTGCTGTCCTCTGGTGTTGTGTAGAAACAACGTTTGTTAGGCCGCGGAAATGCGGTGTGGAAGACTCCGAATACAATCGTCCACAAGGCAGTCCATCAGCTCCGAATGTTCCTGAAATCGAGGGATTGTGGCAGGAGCCTGATGCGTACAGCGCCAGGAACTCGGGATGCAAAGAACAGTATCTTGTACCGGTGGCATGGCACGTGATCTTTAACTCACAGGGGAGGGGTAACATTTCAGACTCTTTGCTGGAGGATCAAATCTGGGTCTTGAACGATGCTTTCTCAGACTCACCATTTCGCTTTGCAACTCGTTCAATCGACAGAACAAGAAACGATGCATGGTTCGACCGCTGCAGAATCCTTAGGTCTAGACTGCGGAATGCGCTTGGTATTACCCCGGCAACAACACTAAACATTTACACATGTGAGTTCTTTGACCAAGCTGTAATCGGTGATGCAACTTTCCCGTGGCGCGAAGCTGAGTCGAATTTAATCCATGGCGTCGCAATTCACTTTGGAACTTTACCGGGCGGAACGATGCCGCAATATAACCTTGGCGATAATGCAGTGCACGAGATCGGTCATTATTTTGGTCTTTTCCACGTCTGCGAGGGTGGTTGTTTTGGCGAGGATGATGAAGTTGCGGACACGCCTCGGTGTTCCGATTACACATACTTCTGCACCAACGAATCAGTGGACACTTGTACAACTCAAAGTGGACTGGATCCTATTCACAACTACATGGGCTACATAGAGGATAGATGCATGTGGGAATTTACGCCTGGACAGATAAACAAAATGGAGGGAGATGTCAAGCTCTACCGGCCTACTCTAGTGAAAAACATCTACAGACCCTGTACAATTGATGCTGTATTCCGTTGGTCAAATGGATTCATCTATTTCTTTCTGGGATCAAACTACTATCGCTACAACGAAGACAGTCATGAAATAGACCCAGGCTACCCTCGGCCAATCAGCGATCACTGGAAGGGTGTCCCATCTTCGATAGATGGAGCCTTCAGATACGTCAATGGAATGACGTACTTCTTCAAAGGAAACCAGTATTACAGGTTTAACGACTCATCACTGAGTGTTGATGCAGGTTATCCTCGCTTGATAAGTGACTTCTGGGTTGGGGTGCCAGACAATATTGATGACGTGATCAGCTACTCGAATGATTTCACGTACTTCTTCAAAGGGTCACAATACTACAGGTTCAATCCAACAACCCAAAAAGTGGACCTCGGCTATCCGCGCCCCATAAGCTCCTACTGGAAAGGGATCTCAAACGACATTGAAGGCGCCTTACCGTGGTATAATGGAGGCGTGTATGTATTCAAGGACACGCAGACCTGGTTCTTTTTACACAGTGATTACTCATTAGGTGTCCTATCCAGCTATCCTAAGTCGATCACAAAGTGGTGGAGTCACGCCCCTAACATGACTGGATATACTGTGTTTAGAAACTCGATGGAGACGAAAGGAAGTGAATATAAGAACAGCCAAGAAGCTCATACAAGTCCCCTTTCTGTCAGCAAGTTCTACACTGATTTCCTCGAAATAGCAGCCTTACCAATACACTCTGTTATTCTACGCAGATACCTGAACGGCAACACGTACTTCTTCAAGGGAAACAGTTACTGGCGTTACAATGAGCAGCTATGCCAAGTTGACGTGGGATATCCGCGCTCCCTGGCAGCCTGGGGAGGAGTTCCAGCGGAAGTAGATGCGGCTTTCGTTTGGAGTGACGGAGAGGCGTACTTCTTTAAAGCAAATCTCTACTACAGGTACAACAGTAGCCAACAAAATGTGCAAGATGGTTTTCCACGAGAAATAAACTCGTTCTGGCATGGAGTACCCAATAATGTGAGCGCAGTGTTCAGATATACCAACGGCATCACCTATTTCTTCCAAGACTCGCTTTACTATCGCTTCAACGACACCACCCAGATGGTGGACCCAGGCTACCCACGGCCGATATCCTCGTTTTGGAAAGGAGTCCCTGATAACTTTGACACCGTCTACACTTCAGGATGTGGACACGTGTACTTCTTCAAAGAAAACCTCTTTTACCGTTTCAACCAGACAGCAGAGCAAGTCGACCCGGGTTTCCCTAAATCCTTATCTCTGTGGAGAGGAGTACTTTATCAACCTTAG

Transcript

ANN24364-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4RGT4	Extracellular metalloprotease MGG_08041 OS=Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MGG_08041 PE=3 SV=1
D1ZSU8	Extracellular metalloprotease SMAC_06893 OS=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) OX=771870 GN=SMAC_06893 PE=3 SV=1
Q871C5	Extracellular metalloprotease NCU07200 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=B8G12.220 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00045 all species →	Hemopexin	Hemopexin	Repeat	Interproscan
PF05572 all species →	Peptidase_M43	Pregnancy-associated plasma protein-A	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR018487 all species →	Repeat	Hemopexin-like repeats	Interproscan
IPR000585 all species →	Domain	Hemopexin-like domain	Interproscan
IPR036375 all species →	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR008754 all species →	Domain	Peptidase M43, pregnancy-associated plasma-A	Interproscan
IPR018486 all species →	Conserved_site	Hemopexin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24364-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.