Gene detail

Detailed information of ANN24369-RA in Leptoseris scabra

Genomic Location: Scaffold_1__1_contigs__length_42512999:39628919...39630096
NR annotation: XP_015769730.1, PREDICTED: NTF2-related export protein 2-like [Acropora digitifera]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UNA4	NTF2-related export protein 2 OS=Mus musculus OX=10090 GN=Nxt2 PE=2 SV=1
B2GV77	NTF2-related export protein 2 OS=Rattus norvegicus OX=10116 GN=Nxt2 PE=2 SV=1
Q5ZLH0	NTF2-related export protein 2 OS=Gallus gallus OX=9031 GN=NXT2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008597 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02136 all species →	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018222 all species →	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR002075 all species →	Domain	Nuclear transport factor 2 domain	Interproscan
IPR045875 all species →	Family	Nuclear transport factor 2	Interproscan
IPR032710 all species →	Homologous_superfamily	NTF2-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12612 all species →	NUCLEAR TRANSPORT FACTOR 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0044613 all species →	Cellular Component	nuclear pore central transport channel	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14285	NXT1_2, P15; NTF2-related export protein 1/2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.