Detailed information of ANN24387-RA in Montipora grisea

Genomic Location: Scaffold_35__1_contigs__length_1089412:844885...851599
NR annotation: YP_007354245.1, intein-containing DNA-directed RNA polymerase subunit 2 [Acanthamoeba polyphaga moumouvirus]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7T6X7DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=RPO2 PE=1 SV=2
P38420DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB2 PE=1 SV=2
Q8SR75DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=RPB2 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04560RNA_pol_Rpb2_7RNA polymerase Rpb2, domain 7DomainInterproscan
PF04561RNA_pol_Rpb2_2RNA polymerase Rpb2, domain 2DomainInterproscan
PF04567RNA_pol_Rpb2_5RNA polymerase Rpb2, domain 5DomainInterproscan
PF04566RNA_pol_Rpb2_4RNA polymerase Rpb2, domain 4DomainInterproscan
PF14528LAGLIDADG_3LAGLIDADG-like domainDomainInterproscan
PF04563RNA_pol_Rpb2_1RNA polymerase beta subunitFamilyInterproscan
PF04565RNA_pol_Rpb2_3RNA polymerase Rpb2, domain 3DomainInterproscan
PF00562RNA_pol_Rpb2_6RNA polymerase Rpb2, domain 6DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014724Homologous_superfamilyRNA polymerase Rpb2, OB-foldInterproscan
IPR015712FamilyDNA-directed RNA polymerase, subunit 2Interproscan
IPR007641DomainRNA polymerase Rpb2, domain 7Interproscan
IPR037033Homologous_superfamilyDNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyInterproscan
IPR027434Homologous_superfamilyHoming endonucleaseInterproscan
IPR004042DomainIntein DOD homing endonucleaseInterproscan
IPR007642DomainRNA polymerase Rpb2, domain 2Interproscan
IPR007647DomainRNA polymerase Rpb2, domain 5Interproscan
IPR036844Homologous_superfamilyHint domain superfamilyInterproscan
IPR007646DomainRNA polymerase Rpb2, domain 4Interproscan
IPR004860DomainHoming endonuclease, LAGLIDADGInterproscan
IPR007644DomainRNA polymerase, beta subunit, protrusionInterproscan
IPR007645DomainRNA polymerase Rpb2, domain 3Interproscan
IPR007120DomainDNA-directed RNA polymerase, subunit 2, hybrid-binding domainInterproscan
IPR037034Homologous_superfamilyRNA polymerase Rpb2, domain 2 superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0032549Molecular Functionribonucleoside bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0004519Molecular Functionendonuclease activityInterproscan

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