Gene detail

Detailed information of ANN24408-RA in Montipora grisea

Genomic Location: Scaffold_73__1_contigs__length_348624:17930...20242
NR annotation: KKT24083.1, UvrD/REP helicase [candidate division TM6 bacterium GW2011_GWF2_43_87]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24408-RA

ATGGAAAAAATCGCCGCATTTAAAACCTTTCTTGACAATAAACTGAACCCGAAACAAAAAAAAGTTGTTGTACAGAAAAATGGAGTCCTACTTGTATGCGCTGGTGCCGGGTCAGGGAAAACTCGCGTTATTACTGCTCGTATCACAAACTTAATTCTTAACGAGGGTATTGAACCCTCTGCCATTCTTGCACTTACTTTTACTAATAAAGCCGCACGAGAAATGCGCGAGCGTATTATAGAGTTTTTACCCACGAAACTTCAAACACCCTATGTCGGAACATTCCACTCATATTGTTTACGCCTACTTAAAATAAACAGCCAACTCTTAGAGATTCCCGATTTTGCCATTCTCGATGAAGATGACAAAAAAAAACTGATCCAAAAAATTATCAACGATCATGGTGTTCAAAAAAAAATAAACCCAAAACAGGTCACATACACCATTTCGCGCCTAAAAAACGCTGCACTTAATGGCGTTGTGGACGCCAACCAGATAGGTGATCCACTTTTACAAAAACTATTTGTACTCTACGAACAAGAAAAGAAAAAAAGCCACTGTTTTGATTTTGACGACCTGTTGCTCGAAACACTGAAATTATTTAAACGTGAACCTGAATTTAGAAAACAGTACCAACAGAGAATTCGCCACGTACTAATTGATGAATACCAAGATACCAACCACGTGCAACATGCCCTACTTAAAGCCATTGTACACAACACAAAAAGTAAATTTTGCTTAGACTCACTCTGCGTTGTCGGAGACGAGGACCAGTCAATTTACTCCTGGCGTGGCGCTACAGTAAGCAACATTATAAATTTTAAGCACGATTTCCCTTCAACAATACATATCACTGTCGAACAGAACTATCGCTCTGTACAGCCAATTCTTGAAGCTGCAAACCATGTTATTAAAAACAATAGTGAACGGAATCAAAAAAAATTATGGTCCGATAAACCAGGCACTGACCGTATCCGCGTCGTCCAGACCATGTCTGGGTACCAAGAAGGTGATTTTGTCGCAGCACTTACTGCAAAAACATTTGCTCAAAATAAAAAAGCGACCTGCGCAGTACTCTACCGATCCCACTACCAATCACGGGCAATCGAAGAAGTGCTAATTCGCAACTCTGTTCCTTACAAAATTATTGGCGGAATCCAGTTCTACGAACGGCAAGAAATTAAAGACCTTCTTGCCTATTTACGCTTAACAGCCAACCCATTTGATCGTGTCTCTTTTATGCGCGCTTACAATACACCCTCACGAGGACTCGGCACAAAGTTTGAAGAACTCTTTTTTGAGCAATGGGAACAGGAACCATTTTTATCATTCGATGAAATAGCACAAAAAATGTTCACCAATGAAGTGGTCACTAAAAGTCGAGCACTTAAATTACGACAATTTATTATGGTCTTTAAAGATCTTAATGCTGATTCCAACGCTTCAGAAGCACTAAGCACGCTCATACAGCGTACTGGATACCTTGGCCACTTACAAAACAATACCGACCAAGAAGAGGCACGAGCGCGTAGTGAAAACGTCAAAGAACTTATCAACGCAGTTCAAGCAATGGAAACACGCAATATCTTTACCGTCCGTGAGTTTTTAGAAGAAGTTGCACTTCTGCAAGAGCACACAACCAAGTCGGACGAAAATCAAAATTATCTTTCTCTCATGACACTACACGCTGCAAAAGGACTGGAATTTGACACCATCATGCTTACAGGCTTAGAAGAAGGGCTTTTTCCAAGTAGTCGCTCTATAATGGACCCTGACGCGCTAGAAGAAGAGCGACGTTTATTGTATGTGGGCATAACCCGCGCGCGAGAACGACTTTTGATCACTAATTCACGCTACCGTTACACCTACGGCCAGATGAATGAGCAGCTACCATCACGCTTTCTGGACGAGATCCCCGAAACTCTTGCCCATTTTGATGACGCAGCACAGTGGCGTACGTACCAAATACAGTCATACATTACCCAATGGCTCACCGGCACTGCTACACAACATTCTACTCACCCTGCAGCCAACTATAGGCCTGCACAACAGACCAAAAAAAGTTCGTTCAACTGGGACATGCCAGCCTTTGTTAAAAACAATACCAATCGTTCACCTGCACGTACACCGCCCAAATTAGTAACAGACAAAAAACTGAGAAGTTGGAAAAAATATCAACCGGTACGGCATAAAAAGTTTGGAACCGGTGTAATCGAAAAAATAGAAAAAAAAGGTGCCGATACAACCTACCTGACTATAAAATTTTCTTCCGGTAGTAAAAAAATTGATGCTAAGTTTATTCAGGTGATTTAA

Transcript

ANN24408-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0A5A4	ATP-dependent DNA helicase UvrD1 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=uvrD1 PE=3 SV=1
P9WMQ0	ATP-dependent DNA helicase UvrD1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=uvrD1 PE=3 SV=1
P9WMQ1	ATP-dependent DNA helicase UvrD1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=uvrD1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011730 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00580 all species →	UvrD-helicase	UvrD/REP helicase N-terminal domain	Domain	Interproscan
PF13361 all species →	UvrD_C	UvrD-like helicase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014016 all species →	Domain	UvrD-like helicase, ATP-binding domain	Interproscan
IPR013986 all species →	Homologous_superfamily	DExx box DNA helicase domain superfamily	Interproscan
IPR000212 all species →	Family	DNA helicase, UvrD/REP type	Interproscan
IPR014017 all species →	Domain	UvrD-like DNA helicase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11070 all species →	UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0000725 all species →	Biological Process	recombinational repair	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003678 all species →	Molecular Function	DNA helicase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043138 all species →	Molecular Function	3'-5' DNA helicase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03657	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA	EC:5.6.2.4	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.