Detailed information of ANN24446-RA in Montipora grisea

Genomic Location: Scaffold_2059__1_contigs__length_46384:37299...41127
NR annotation: XP_014668464.1, PREDICTED: E3 ubiquitin-protein ligase RFWD2-like isoform X3 [Priapulus caudatus]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8NHY2E3 ubiquitin-protein ligase COP1 OS=Homo sapiens OX=9606 GN=COP1 PE=1 SV=1
Q9R1A8E3 ubiquitin-protein ligase COP1 OS=Mus musculus OX=10090 GN=Cop1 PE=1 SV=2
P43254E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006674 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042755
all species →		FamilyE3 ubiquitin-protein ligase COP1Interproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44080
all species →		E3 UBIQUITIN-PROTEIN LIGASE COP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN24446-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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