Gene detail

Detailed information of ANN24448-RA in Montipora grisea

Genomic Location: Scaffold_422__1_contigs__length_98081:2909...11327
NR annotation: XP_019862547.1, PREDICTED: high mobility group protein DSP1-like [Amphimedon queenslandica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24448-RA

ATGGCTTATAGTCGGCCAACAATTAGCCAGTACTGGCCTCGTAGCGAAAGTACAGGTAGTATTGTACCTGAGGGACTGCAGCCCGGACAAGGAGGAGCCAGCAGCGCAGATAATCCGGGGATGGAGGCTAACGCTAACTCGTCGCCGGGGCTCACTTTCACTTACACGGCAGCCGATATTCAAGGCCTTGCCGACCCCACGCACATCGGCAGGACCATGATGCCACCACATGCACCGGGCCGAGATCACAGCATCTCCAGAGCCGGTCTACCTGTGAGCCCGTATGACACAGTGGAGGCTCTATTGCACCACCAGAAGGCATCCATGGCCATCCCAACTTCACCCAAGCAAACTCAGCTCCAGCCCCATCAGCAACCGAGGGTTCGAGGACGTATGACTCCTTATGCCTTCTTCGTTATGGAGCGACGGGAGTTCTATCGACAGCGAGGCCTTCCAGTCCAGTTTGCAGCGTTCTCCAAAGACTGCTCTGCCCTCTGGAAGACCATGACAGAGGAACAGAAAACCAAGTACCAGAAGTTGGCAGAGGAGGACAGAGAGAGATACCAGAGGGAAATCTCTGGGGGTTACATGAAGCCACTGGCCAAGGACGGGACACGGAGAGGTAGAAAGAAGAAGGAGCCAGGACAACCAAAGAGGAACATGTGTGCATTCCTCCACTTTTGCTCTGAGAAACGGCCCAAACTGAAGGAAGATAACCCAAGCATGGGAGTGGGGGCACTGGCCAAGCAGCTCTCCGTAGCGTGGAAGCTTATGACTCCAGAGCAGAAGAGACCTTATGATGAAATGGCTGGGAGGGACAAGCAGCGATACGAGCAGCAGAAACAAGCATACGAAGCAGGCTATTCGGCTGCATACTTCCAGAGGGACATGCCCCAGGGGCAAGTAGGGCCAGGGGTGCAGCCAGGGATGGTCACACACATGGTGCCACGACAGAGAAGGAGGAGGAAAGATCCTGACATGCCCAAGAGAAATATGTCAGCCTTCATGTTTTATAGTTTAGAGAAACGTCCAGGTATCAAGGCAGAGAACCCATCGTTTGGTGTGGGCAAGCTGGCTCAGCGGCTAGCCCAACACTGGAGAACAATGAGCAGGGAGGAAAGAGAGCCTTTTGAGATTTTGGCAAGGAAAGACAAAGAGAGATATGTTGTGGAACTCAAAGCCTACAAGAAGGGGACATACATGGGTGGTGGGAGGAGGGCAGCCGACTGCAAGCCCATCATCCTGCCTCAGGCTGGTGGAGAGTCATCGGGGTTAGACCCAAGTGGTCCAGAGCTCGGTGGGGGAGAGAGTGAAGAGCCAGGGTCACCTGAACTTGACCAGCTGTGTGAACTCTACCAAGGAATGACAGCTGTAAAATCGGAGCTTTATATTCTGCAGTTTCACTTGCTTGGGATTATGCTTGTCTTTCTGACATACAAGGCCTCAGACCACCTTGCACGTAAATTACACGAAAAAGAGGAGAGGGGATTGAGGCTCTTGCCAGAGGAATTGGTCATCAACTATAAAGATGATGTGCTCACCACTGGTAGGCTGGGAAGCATGAGACCGAAGAGGAAGAGAAAGGATTCAGAGGAGGAGAATGACTATCAACCAGAGGTAGATTTTCTACAGCTGCAGATGAACACGCTCAGGAGATACAAGAGACACTATAAACTGCAGCTTAAGCCAGGGACCAACAAAATCCAGTTGGTTGAGGCCATATCCAAGCACTTCAAAACCATTCGTGTGTCAGAGAAGAAAGCTGTACCACTTTTCATCTCTATGGTCAAGTCCCACAAGAGCAAACTGGACCAGCCTAAACCACTGGACACTAGGTGGAAGTTGGTGGCTGCAGAACTCGAGATAAAAGCTTCGCTCCAAGAGACCACTCCTGCAAGGGGATCACCGTGTCACCTTCGGTTGGGATTCAAACTTTTGAACGCCATTTCTCACCCGCCTAGCCGAGCAGAAGCTGCTAAGTTTAGCACCTACAGCTACCCCGTTGTTGGACTCGCTGAAGCAATGCCTCCAAGGAACAAAGACCCTAACAAGCCAAAGGGACGCACCAGCGCCTATGCCTTCTTCGTAAAGACCCGTAGGCAGAAGTACCAAGACGAAGGCAAGCAGGTGAAATTTACAGATTTCTCCAGAGAGTGTGCGGAGCTGTGGAAGAACATGGACGAGGACGAAAAGACCTCGTACCACGAGAAAGCAGAGGAAGACCGCAAGCGCTACCAGCGTGAGATGGCCAACTACAACCCGCCTTCGGATGATGAGGAAGGAGCGGGACACGGTCGACGCAGGAGGAGGAAGAAAGATCCTAACATGCCAAAGAGATCCATGTCAGGGTTCATGTTCTTCAGCCAGGCCAAGCGTCCTAAGCTACGTGAACAGAACCCCTCAGCAAGTGTTGGTGACATAGCAAAGCAGCTGGGAGCAGCGTGGAAAATCATGACGCCTGAGCAAAAAAAGCCATACGAAGACCAGGCAAAAAAAGATCGGGAGAGATATGACAGTGAGATGGAGCAGTACAAAAAGGGAGAGCAAGCAGCTACGTCGCCTGATGAGGAGGGCAGTGAAGAGGAGGAGGACGAGGATTAG

Transcript

ANN24448-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q24537	High mobility group protein DSP1 OS=Drosophila melanogaster OX=7227 GN=Dsp1 PE=2 SV=1
P40618	High mobility group protein B3 OS=Gallus gallus OX=9031 GN=HMGB3 PE=2 SV=3
O54879	High mobility group protein B3 OS=Mus musculus OX=10090 GN=Hmgb3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002244 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13867 all species →	SAP30_Sin3_bdg	Sin3 binding region of histone deacetylase complex subunit SAP30	Family	Interproscan
PF09011 all species →	HMG_box_2	HMG-box domain	Domain	Interproscan
PF00505 all species →	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071 all species →	Domain	High mobility group box domain	Interproscan
IPR036910 all species →	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR038291 all species →	Homologous_superfamily	SAP30, C-terminal domain superfamily	Interproscan
IPR025718 all species →	Domain	Histone deacetylase complex subunit SAP30, Sin3 binding domain	Interproscan
IPR050342 all species →	Family	High Mobility Group Box (HMGB)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48112 all species →	HIGH MOBILITY GROUP PROTEIN DSP1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008301 all species →	Molecular Function	DNA binding, bending	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24448-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.