Detailed information of ANN24562-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:484445...525618
NR annotation: CAH3016658.1, unnamed protein product [Porites evermanni]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K3E5Jouberin OS=Mus musculus OX=10090 GN=Ahi1 PE=1 SV=2
Q8N157Jouberin OS=Homo sapiens OX=9606 GN=AHI1 PE=1 SV=1
Q6DTM3Jouberin OS=Rattus norvegicus OX=10116 GN=Ahi1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003417 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyUBD|Other|SH3 · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00078
all species →		RVT_1Reverse transcriptase (RNA-dependent DNA polymerase)DomainInterproscan
PF00018
all species →		SH3_1SH3 domainDomainInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR001452
all species →		DomainSH3 domainInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR043502
all species →		Homologous_superfamilyDNA/RNA polymerase superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR000477
all species →		DomainReverse transcriptase domainInterproscan
IPR036028
all species →		Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR052803
all species →		FamilyPrimary Cilium-Associated JouberinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44499
all species →		JOUBERINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0036064
all species →		Cellular Componentciliary basal bodyInterproscan
GO:0044458
all species →		Biological Processmotile cilium assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN24562-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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