Detailed information of ANN24564-RA in Montipora grisea

Genomic Location: Scaffold_40__1_contigs__length_722149:515630...516889
NR annotation: MYC95079.1, transcription termination factor Rho [Caldilineaceae bacterium SB0661_bin_32]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q03222Transcription termination factor Rho OS=Bacillus subtilis (strain 168) OX=224308 GN=rho PE=3 SV=3
P38527Transcription termination factor Rho OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=rho PE=1 SV=2
P52152Transcription termination factor Rho OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=rho PE=3 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07497Rho_RNA_bindRho termination factor, RNA-binding domainDomainInterproscan
PF00006ATP-synt_abATP synthase alpha/beta family, nucleotide-binding domainDomainInterproscan
PF07498Rho_NRho termination factor, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011113DomainRho termination factor, RNA-binding domainInterproscan
IPR004665FamilyTranscription termination factor RhoInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR000194DomainATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainInterproscan
IPR011129DomainCold shock domainInterproscan
IPR036269Homologous_superfamilyRho termination factor, N-terminal domain superfamilyInterproscan
IPR011112DomainRho termination factor, N-terminalInterproscan
IPR041703DomainTranscription termination factor Rho, ATP binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46425TRANSCRIPTION TERMINATION FACTOR RHOInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0006353Biological ProcessDNA-templated transcription terminationInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0008186Molecular FunctionATP-dependent activity, acting on RNAInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03628rho; transcription termination factor Rho-Messenger RNA biogenesisko03019deepkoala

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