Genomic Location: Scaffold_40__1_contigs__length_722149:709658...711541
NR annotation: MXZ22332.1, ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein [Caldilineaceae bacterium SB0665_bin_25]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN24575-RA |
| Transcript |
| ANN24575-RA |
| Protein |
| ANN24575-RA |
| UniProt accession | Description |
|---|---|
| D1C1U7 | ATP-dependent zinc metalloprotease FtsH 1 OS=Sphaerobacter thermophilus (strain ATCC 49802 / DSM 20745 / KCCM 41009 / NCIMB 13125 / S 6022) OX=479434 GN=ftsH1 PE=3 SV=1 |
| B9KXV3 | ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) OX=309801 GN=ftsH1 PE=3 SV=1 |
| B8G4Q6 | ATP-dependent zinc metalloprotease FtsH OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=ftsH PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001492 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00004 all species → | AAA | ATPase family associated with various cellular activities (AAA) | Domain | Interproscan |
| PF01434 all species → | Peptidase_M41 | Peptidase family M41 | Domain | Interproscan |
| PF06480 all species → | FtsH_ext | FtsH Extracellular | Family | Interproscan |
| PF17862 all species → | AAA_lid_3 | AAA+ lid domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003959 all species → | Domain | ATPase, AAA-type, core | Interproscan |
| IPR005936 all species → | Family | ATP-dependent zinc metalloprotease, FtsH | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR037219 all species → | Homologous_superfamily | Peptidase M41-like | Interproscan |
| IPR000642 all species → | Domain | Peptidase M41 | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR011546 all species → | Domain | Peptidase M41, FtsH extracellular | Interproscan |
| IPR003960 all species → | Conserved_site | ATPase, AAA-type, conserved site | Interproscan |
| IPR041569 all species → | Domain | AAA ATPase, AAA+ lid domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR23076 all species → | METALLOPROTEASE M41 FTSH | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0004176 all species → | Molecular Function | ATP-dependent peptidase activity | Interproscan |
| GO:0004222 all species → | Molecular Function | metalloendopeptidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0030163 all species → | Biological Process | protein catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03798 | ftsH, hflB; cell division protease FtsH | EC:3.4.24.- | Chaperones and folding catalysts | ko03110 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
