Gene detail

Detailed information of ANN24580-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:807652...808806
NR annotation: CAH3161869.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70284	Homeobox protein TGIF1 OS=Mus musculus OX=10090 GN=Tgif1 PE=1 SV=2
Q90655	Homeobox protein AKR OS=Gallus gallus OX=9031 PE=2 SV=1
Q9GZN2	Homeobox protein TGIF2 OS=Homo sapiens OX=9606 GN=TGIF2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010026 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR050224 all species →	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850 all species →	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19383	TGIF1; homeobox protein TGIF1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.