Gene detail

Detailed information of ANN24583-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:836909...847041
NR annotation: CAH3161872.1, unnamed protein product, partial [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V838	Protein LTV1 homolog OS=Xenopus laevis OX=8355 GN=ltv1 PE=2 SV=1
Q96GA3	Protein LTV1 homolog OS=Homo sapiens OX=9606 GN=LTV1 PE=1 SV=1
Q5R8B2	Protein LTV1 homolog OS=Pongo abelii OX=9601 GN=LTV1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006410 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04180 all species →	LTV	Low temperature viability protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007307 all species →	Family	Low temperature viability protein Ltv1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21531 all species →	LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0042274 all species →	Biological Process	ribosomal small subunit biogenesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14798	LTV1; protein LTV1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.