Gene detail

Detailed information of ANN24598-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:1142146...1166667
NR annotation: CAH3119918.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24598-RA

ATGACTGATTCTAAGTACTTCACCACTACGAAGAAAGGGGAGATTTTTGAGCTCAAGGCAGAATTGAACAGCGACAAGAAAGACCGCAAGAAGGAAGCTGTGAAGAAAGTCATTGCTAGTATGACAGTTGGAAAGGATGTCAGCTCCCTGTTTCCTGATGTGGTAAACTGCATGCAAACTGATAACTTGGAGTTGAAGAAGTTGGTGTACCTGTATCTCATGAACTACGCCAAATCTCAGCCTGACATGGCTATCATGGCAGTCAACACCTTTGTCAAGGATTGTGAAGACCCAAACCCTCTGATCCGTGCACTTGCCGTCCGTACCATGGGCTGCATCCGTGTTGACAAGATCACAGAGTACTTGTGTGAACCCCTCCGCAAGTGTCTGAAGGATGAGGATCCTTATGTGCGCAAGACTGCTGCTGTCTGTGTAGCAAAGCTTCATGACATTAATTCCCAGCTGGTAGAGGATCAAGGATTCCTTGACTCCTTGAGGGATCTATTGTCTGATTCTAATCCAATGGTTGTAGCAAATGCAGTGGCTGCATTGTCTGAGATTAGTGATGCCTCACCTACTGCTGCCGCCATGATGGAAATTAACTCACAGACTATTAACAAACTGCTTACAGCACTCAATGAATGCACTGATTCTGTTGTGCAGTGTACTCAGTATTTGCTGTCAATTTGTCAAACGTTTTTTACCATGGTTCGTCCTCGCGTCGCTTCGACCACCAATCGCTCATCTGCCCAACGCGAAGATCTTTCAGTCCTTTCAAGCGAGGTCCTGCAGCTTCGCCTTCAAGCCCTGAACCTCCCAATAACTGGCTCTAAAGGACAGCTCCTCGCCCGTCTCAAGACAGCCCTGTCAGGGACCACCGGTTCTGTCCGTACTCGGAATCTAACAGCGCGGGGAAAGACAGGAAAATCTCGCCAGCGAAGAGCGCCTCGCCTTGCTGCAAGTCGCCGGAGCGCCGGGCAAATTCCCGACCGTCCAGAACGAAGCGTAGAGACTCCTGAACACGTCCCAGAACAAGGGGACAGCGCCCTATCGGACAACGCCTCATCCTGTTCGATTGAAGATATGTTCGGGCAGGACGACCCAGAAGAACCTGTTACTCCTGCACAACAGTCCTTCAGTCCGGCACAGCGAACCGCCATCGAAGCGATCGTCACTGAGTCCGTGAGCAACGCTTTGGTGGCCTTCCGCGCGCCCGAAAATGGCCACGTTTCGCCTCCACTCGACCAACGTTCCCGTGCTCCTGGCATGGCCTCGCCTTTGGGTCTGACAAGGCCAGTGGACCGCCATTTGGAGGACAAAATACTCCGCGGTGAGTACGTTGATCTTGCGTTGTTGTTGCCGGACAATTTATATCAGTCCCAGACCCCCGAGCTTCAGTTACGGTTAGACGACTCGGCCCTAGGCTCCCTGGGTTCCCCGGTAACTATGGTTCGGAAGCGGAAACCCGTCATAGATACTTTCCAGAAATGGCTTGATGCCTTCACGACATACATGCTAGTGCTTGTGACAGCCTACCCGCGAAGAGCCCTTGAACTCATAAAGTACCAGCAAATTATTAGTCGGGCCGTCACTAAATTTAAAGTGTTTGCTCGAGTCCATACCACATCCAGGATGACTGTCCTTCCGCTGACCCCAACAGAAAACCTCGCCGAACCCAGACTGTCTGCTTTGACTTTAACAAGTCCTCCGGCTGTCGCCGCCGCAACTGCAACTACCCGCACGTGTGCCGCCGCTGCTATTCCAGTAGCCACGCTGCCCCAGCCTGTCAACAGCCATCGTCCACCAGCCCCAGTGCCTCCAAATCCTCTCCATCCAGTGAGCGCGGCAAAAAGTAAAGTGGAGCAGCTACGGCGCCATGTGACGCCACAAGTATCCTCACCCATTGACATTTACCGCTTAGAGTTAGAATTAGCTAATCACCCTGATAAAACTTTTGTTTCTAATCTGCTTAGCATGCTTAGGGAGGGCGCACACATTGGTTATTCTGGCCCTCGTGCACACCGGGTTTCCCCTAATCTAATCTCTGCTGCCCAGCACCCTGATGTAGTTACCTCGAATTTGCGTAAAGAGGTTACCCTTGGCAGGGTTGCGGGCCCCTACCCCTCACCGCCCCTGCCTAACTTTCAATGCCACCCTGTGGGTGTGGTCCCCAAAAAGCACTCTAATGAATGGCGCACAATCTACCACCTCTCCTATCCCCAAGGGACTAGCATCAACGACTATATTCCCAAGGACCCCTTTTCCCTGAGTTATGTTCGGGTCGACGACGCCATCAGTATCCTTCAGTCCCTGGGGAGGGGTGCCTTCATGGCCAAGACCGACCTCAAATCGGCTTTTCGCTTGATACCAATTCACCCAAACGACTGGAGCTTGCTGGGTATCTTCTGGCAATCCCAGTACTACGTCGACCTGTTCCTTCCCTTTGGTCTCCGCAGTGCGCCATTCCTCTTTAATCAACTTTCCGACGGGCTTGAATGGATACTTAAAAACAACTACGGTCTCCAGCATGTTATTCATATCCTAGATGACTTCTTTATTGCGGAACAGTCAAAACTGTCCTGCCTTTCTAGCTTTAGTACCCTACTACGGGTTTTCATGTCACTTAAGGCCCCTGTGGTGGCGTCTAAAACCATAGGACCCTCCCAGGTAATTGAATTCATGGGAATTGTCTTAGACAGCGTACGCATGGAGGCCCGCCTGCCCCAGGACAAACTCACCCGGATAAACGAGCTCCTATCCTCCTTCCAAAAACGCCGCTCCGTGCGCCTAGTGGAGCTTCAATCACTCATTGGTACCCTCCAGTTCGCGTGTAAGGTGGTGGTCCCGGGCAGGACTTTCCTTCAGCGCGCTATCAATCTGACTAGGGGGGTCCCCAGTCGTTTTCATCACATCAGGCTTAATAGGGAGTTTTTCAAGGACCTCGATATGTGGAAGGTTTTCCTAACGAAATGGAACGGGCGTTCCTTTTTTCTGGAGTCTTCCACTACTCCATCCCCGGCCCTGGAGCTCTACACCGACGCAGCCAGCACAATAGGTTTTGGCGGTTTTTTCCAGGGAAAGTGGTTTCAGGGCCGCTGGCCACCCCACCTGCGTTTAAACAAGGGGCAGGGCATAAGTATCGAGTGGCAAGAGTTGTTCCCTATTGTCGTCGCCTGTGCTATATGGCACCCCTTTTTCGTGGGCAAACGCCTTCAGTTTTGGTGCGACAATGAATCGGTGGTATCTATTATCAATTCTGGGCATTCCAAGGCACCCCGTATCATGGATTTGCCCAATCTGGCATGCCCGCAGTATATGACAGTTCAACTAAAATCGTCCAAAACCGACGTCTTTAGGCACGGGCAGTCCCTCACCGTAGCTCGCAGCTCTTCTACAATCTGTGCAGTCATGGCTATGCGGGATTACTTTCTCTTAGCAAGGCCACAAACAGGACCACTTTTCTATTTCCAATCGGGACGCTATCTCACCCGGGGCGTTGTTTCCCACCTGCTGCAAGACAGCGCAAGGTGGGGTCAGATCTTTATCCTTGATTCCTTGGCACAGTACACCCCAAAAGATGACCGTGAGGCTCAGAGTATCTGCGAGCGTGTCACCCCCAGGCTCTCTCATGCCAATGCTGCTGTTGTTTTGTCAGCTGTAAAGGTTCTTATGAAGTACATAGAGATCATGACACCATCTTCAACGTATGTTCAGAATCTCATCAAGAAGCTCTCCCCTCCTCTTGTAACCTTGTTGTCAAGTGAACCTGAAGTCCAGTATGTTGCTCTGAGGAACATCAACTTAATTGTGCAAAAGCGGGCGGATATCCTCAAGAATGAGATGAAAGTGTTCTTTGTGAAGTATAATGATCCAATTTACGTCAAACTGGAGAAGCTTGATATCATGATCAGACTGGCAAACCAGCAAAACATTGCTCAAGTATTGGCAGAGCTAAAAGAGTATGCCACTGAAGTTGATGTTGATTTTGTCAGAAAGTCAGTGCGTGCCATTGGTCGTTGTGCCATCAAAGTTGAGCAATCTGCTGAACGCTGTGTGAGCACATTGTTAGATTTGATCCAAACCAAGGTCAACTATGTGGTACAAGAGGCCATTGTTGTTATCAAGGATATCTTTAGGAAGTACCCAAACAAGTATGAGAGCATCATTTCCACCTTGTGTGAAAATCTGGATTCTCTTGATGAGCCCGAGGCCAGAGCGTCAATGATTTGGATCATTGGTGAATATGCAGAGCGAATTGACAATGCTGCAGAATTGTTAGAGTCTTTTCTGGAGGGATTCCAAGATGAAAATTCTCAGGTGCAACTGCAGCTTCTGACGTCCATTGTGAAGCTTTTCTTGAAGCGTCCAACTGACACACAAGAGCTGGTTCAGCAGGTTTTAAGTTTGGCAACACAGGATAGTGATAACCCTGATCTGAGGGACAGAGGTTACATCTACTGGAGACTGCTCTCCACTGACCCTGTGGCTGCAAAGGAAGTTGTGCTGGCAGAGAAGCCGCTGATATCAGAGGAGACAGATCTCTTGGAACCAACCCTGCTGGATGAACTTATTTGCAACATTTCCACACTGGCATCCGTCTATCACAAGCCACCAAGCTCATTTGTGGAGGGCCGTACAGCCGCAAGGAGATTCACACTGCCCCCAAGAGCTGAGCCATCACCAGGAGCTGAGACTGAAGAAGCTCCACCAGCTGCTGCCCAACCAGTGGCTGCTCCAGCTGCCGCTGCCACCACTGCTGCTGCCCCGGCCCCTGCTCCTGTCCCTGCAGCTGCCCCACCAGCTGCCGACTCTCTCCTTGGAGATCTTCTGATGGACATTGGTCCTACTCAGCCTGTCTCTGCTCCAAGCATGGCTCCTGCTCAGCCAGCAGCACCAGGAGGCGGTGTTATGGATCTGTTGGGAGAAGACTTCAGTGGCTTACAGCTTGGTGGAGGCCCAAGCCCCGGTCAGCCGGCTGTCGCAGCAGGAGGCCTGGGAGACCTTTTCAGTTTATCTGGGGGAGTTGGTATGCCAGGCGGAATGTATTCAGCACCTAAACAGATCTGGTTGACGGCTGCCAAAGGAAAAGGAATGGAAGTGCAAGGAACATTTTCTCGCCGTCAAGGACAAATTTACATGGACATGACATTCAACAACAGAGCCATGCAAGCCATGGGATCGTTTGCAATTCAGTTTAATAAGAACAGTTTTGGGCTGACTCCAGCCACTCCGCTGAATATCCCGAGTCCTTTACTCGCCAATTCTGCAGCAGAAACCTCAATGCCTGTCAACTTGAATGGACCGGTGCAGAGGATGGATCCACTGACCAACCTTCAAGTTGCGGTTAAGAACAATGTCGACGTATTTTACTTCAGTTGCGCGGTGCCGTATAACGTGCTGTTTGCTGAAGACGGACAGATGGACCGCAAAGTTTTTCTAGCAACTTGGAAGGACATTCCTGCCGAGAATGAAGTACAGAAACAAATCTCCAACGTTTCATTTTCGTCAGAAGTCGCTCAGTCAAAACTCTCCTCCAACAACATTTTCACCATCGCTAAACGGACCGTTGAAGGACAGGATATGTTATATCAGTCACTGAAATTCACCAATGGTATCTGGGTTCTAGCAGAGCTTAAAGTGCAGCCTGGTAGTTCTGTGGTGCAGTTGTCCCTGAAGACGCGCGCTATGGATGTTGTTATGGGGGTACAAGACATGTACCAGACCATTCTACAAAACTAA

Transcript

ANN24598-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10567	AP-1 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP1B1 PE=1 SV=3
P63009	AP-2 complex subunit beta OS=Bos taurus OX=9913 GN=AP2B1 PE=1 SV=2
P63010	AP-2 complex subunit beta OS=Homo sapiens OX=9606 GN=AP2B1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09066 all species →	B2-adapt-app_C	Beta2-adaptin appendage, C-terminal sub-domain	Domain	Interproscan
PF02883 all species →	Alpha_adaptinC2	Adaptin C-terminal domain	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR013037 all species →	Homologous_superfamily	Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR012295 all species →	Homologous_superfamily	TBP domain superfamily	Interproscan
IPR015151 all species →	Domain	Beta-adaptin appendage, C-terminal subdomain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR009028 all species →	Homologous_superfamily	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Interproscan
IPR013041 all species →	Homologous_superfamily	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Interproscan
IPR008152 all species →	Domain	Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR026739 all species →	Family	AP complex subunit beta	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134 all species →	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030131 all species →	Cellular Component	clathrin adaptor complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24598-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.