Gene detail

Detailed information of ANN24640-RA in Montipora grisea

Genomic Location: Scaffold_39__1_contigs__length_759633:451351...455633
NR annotation: RKU08502.1, hypothetical protein C6502_14920 [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24640-RA

ATGCGAGATTTTTCTGTGTTTATTCGAGATATACCGGATTTTCCCAAAGAGGGCATCTCATTCAAAGACATTACGCCCCTTTTAGGGAATAGTAACGCCTTTCAGGACGCGATTGAGACATTCGCAAACCGTTATGAATCCGAATCAATTGATGCGATTGTCGGAATCGATTCACGAGGCTTCATTTTCGCGTCTGCACTCGCCTACCGGCTCGAGGTGTCGTTTGTTCCGATTCGTAAAAGTGGTAAGTTGCCCTATCATACACACGAAGCTACCTACGAACTGGAATACGGCACGGATACGCTCGCGATTCATCAAGATGCGTTCCCCAAACAGAGTCGGGTGCTCATCTGTGATGATGTGTTGGCAACCGGCGGCACGCTCGCTGCATCCATTGAACTAGTTGAAAAATTGGGCGGTACCCTTGTCGGTGTCGCGCTCTTAATCGAGATGACCTTCCTCAACGGGCGGGAAAAACTGGTGAACCGCCATCGGTCTGGGAATGCTTTATACCTCATCCCGACCCCGGATAATTTCTACAATCCTTTGTACGGCAACTTACCGCTTTGGATGCAAGAAAAACTTCCTCCCTTTGAAGTCAGCGAGGAAAAGGCTTTGAAGGTTAGCCTTGCAGAAGTCGAGTACCCTGAAGGTGTCAACTTCCAAGATGCTACCCTCGAGCTTCAGGATGTATTCCGGGTTCACCTCAGAAAACTCGGCATCGAAGAAACAATCGATTATCAATTTGATACCACCGAAGCGCGGGAATTTTACGTACGGCTGACCTCGGAGAAAGCACTTCAAAACCCACATGCAACGCTCCAAAACTTACACCTATACGGAAGCCTCCCGATCACGCTCCGGCGGCTCATCCCGGATAACCGATTAAAGTTAGGGTTGGATCTGAAGGGCGGTGTCCACCTCGTCCTTGAGGTAGATTTGGAAACCTCGAAAGGAGAACTGCTCCGAGAACACGCGATCTCCATTCCTGATAAGCTCAGAACAGAGGCTATTTTATGCCGAGAAGTTGAACAGGTGAAGGGGCAAGAGGCACTGAACGTGCCTGTCGGCATACCCTCCCGGCTCCGATCCGATGCAGCGGAAAAAGCGAACTACCTCGAAAAAGCCGAAAGCCTCTTAAACGAGTTAGAATTTTTTGAAGACGCAGTACTCTTCGCCGAGAAGGAGGCGCAATCTATTTATCAACTCAAACTTAGTGAGAGTGGCATCCAAAAATACAGCGAGCAGGCTATTGAGCAAGTGCTTATTGTGTTGCGAAATCGGGTTGATGCGTTCGGTGTGTCTGAACCCTCCATCCGGCGGGAGGCGAATCACCCAAGAATCATCGTTGAGTTGCCAGGTGCAAAAGACTCCTCAAAGCCGCTTCAGATTGTAAAAACAATGGGGAGACTTGAGTTTAAACTCGTTGAAAAATCACCGACCGGTGGGAATTTGTGGCGAGGGAGCGCTGATACACCCCCACCAGATAATGTGCCAGAAAATAGCGAAGTCCGCTATCATTATGAAACCGGCGACTGGTACGTTTTGCAAAGCCCCGTTCTCCTGAGCGGCGACCGGATCGTTGATGCTGGCCCTTCCGCAGGCAGAACGACCTTTGACATTGTCGTTTCAATGAGTTTTGACAGTACCGGTAGGCGCAAATTTGCGGAGGTCACGGGGGCGCATGTCGGTGAACATTTGGCAATTCTCCTTGATGGAAAAGTTCAATCAGCCCCAGTCATCCAGGACCAGATTGTCGGCAATGCGATTATTGAAGGCAACTTCACTTTTGAGGAGGCAAACTATCTGTCCAACATCCTCAAGGCAGGGGCGTTTCCGGTAGGAGTCCAAATTGCCGAGGAACGGACTGTTGGGCCCACCCTAGGTCAGGAATCTATTGACGACGGGATTAAAGCAGCACTCATCGGCATGGGGGGCGTACTGTTCTTTATGCTTATCTACTATAGGCTCTCCGGGTTGGTTGCCATCACTGCACTCGTGTTTAATATGTTGATTATACTCGGTGCCTTGGCAGGATTTGGTGCCGCACTGACGCTCCCTGGCATCGCAGGCCTGGTGCTGACTATCGGGATGTCTGTTGATGCCAATGTGCTTATCTTTGAGCGAATTCGCGAAGAGTTGCGAACCGGCAAAACCGTCTGGTCCGCTATTGTGAGCGGCTATCAACGCGCATTCCTCACTATTTTAGATGCCAATCTCACCACATTTTTTACCGCACTCGTCCTCTATCATTTCGGCACCGGGCCCATTAAAGGGTTCGCGGTAACGCTCGGCATTGGCATCCTCGCCAGCGCAAACGCCACAGTGAACGTAGAAAGGATCAAAAAATTGGAATTACTGAAAAATACAAACTTTGATTTTATCAATAAACACCGCACCGGATTTGTATTCTCAGCGGTACTCATCCTTATCGGCTTGGTTTTCCTTGTTATCCATCAAGGCCCTAACTTCGGCATCGACTTCCGTGGAGGCGTTAAAATCCAAGCCAAATTCAACAGGATGGTAACCGAAGCCGAATTGCAAGCCAAACTTAACGAATTGGGCTACGCCCGGGCAAAGATTCAACTGGATCCGGGCAAAAATGAGGCTTCTATCTCCATGGGCCATCGTCCCGAATTTCAGCAACAACTAATTGACATCCCGATTCTGGCGGATCCGGGCGATGCAACTGCAACAACGCTTCAGGTGAGTAGTAGCGCGGAAAAAGTACATCTGTTGGAACCTGGGGACACAGTCCAACTCATCGATGGTGATATGCAACAACGCAATGAAATTACGGAGGTGGTATCGGGGAAGGATGCCTCTCCTACAGGTGGAGTGATTCAACTGACCTTTGCAAATGCATTCGAGATGGATTTAAGCGAAAACGCTATCATCCAAACACAAGCGAGCGTCGGCAGAATTCTCACAGATGCCCTCCTTGAAGGTGGCGGCAGCTGGCAAGCCCTGCCCGGCGGTGTCAACGTTTCTGAAGTCGGTCCCAGTGTTGGACGCGACCTCAAGTGGGCAGCACTCTGGTCGGTGCTCTGGTCTATTGTGATTTTGTTGGTGTATATCTCGTGGCGTTTTGAGTTCCGCTTCGCCATCGGTGCGATAGCGGCCCTGGTTCACGATGTGCTTATCACTTTGGGCATCTTCGCTGTGCTGTCAAAAGAAATTAACCTGCCCACGGTTGCCGCATTTCTCACAATTATTGGATATTCGCTCAACGACACAATTGTCGTCTTTGACCGGATTCGAGAAAACGCCCAATCCTTGCGAGGGACTGACTATATTGAAGTGCTGAACCGAAGTATCAACCAATCGCTGAGCCGGACCGTGATCACCTCGCTGACAACGTTGTTTGTTGTCGTGGTTATCTTCTTCCTCTCCAGCTCAGGTGAGGAAATTAACACGTTCGCCTTAGCCCTCATCGTAGGTGTGTTGGTAGGTACGTATTCCTCGGTGTTCATCGCCAGCCCGATTTTGTATATCTGGCAACAAAGGCAGCAACAAGCAGAGGCTTAG

Transcript

ANN24640-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SKE6	Protein translocase subunit SecDF OS=Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8) OX=300852 GN=secDF PE=1 SV=1
E6W4K8	Protein translocase subunit SecD OS=Desulfurispirillum indicum (strain ATCC BAA-1389 / DSM 22839 / S5) OX=653733 GN=secD PE=3 SV=1
A0LCK9	Protein translocase subunit SecD OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=secD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07549 all species →	Sec_GG	SecD/SecF GG Motif	Motif	Interproscan
PF21760 all species →	SecD_1st	Protein translocase subunit SecDF, P1 domain, N-terminal	Domain	Interproscan
PF00156 all species →	Pribosyltran	Phosphoribosyl transferase domain	Domain	Interproscan
PF02355 all species →	SecD_SecF	Protein export membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022645 all species →	Family	Protein-export membrane protein SecD/SecF, bacterial	Interproscan
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR005791 all species →	Family	Protein translocase subunit SecD	Interproscan
IPR022813 all species →	Family	Protein-export membrane protein SecD/SecF, archaeal and bacterial	Interproscan
IPR022646 all species →	Conserved_site	Protein-export membrane protein SecD/SecF/SecDF, conserved site	Interproscan
IPR005665 all species →	Family	Protein-export membrane protein SecF, bacterial	Interproscan
IPR005764 all species →	Family	Adenine phosphoribosyl transferase	Interproscan
IPR048631 all species →	Domain	Protein translocase subunit SecDF, P1 domain, N-terminal	Interproscan
IPR048634 all species →	Domain	Protein export membrane protein SecD/SecF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30081 all species →	PROTEIN-EXPORT MEMBRANE PROTEIN SEC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0015450 all species →	Molecular Function	protein-transporting ATPase activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015031 all species →	Biological Process	protein transport	Interproscan
GO:0003999 all species →	Molecular Function	adenine phosphoribosyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006168 all species →	Biological Process	adenine salvage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12257	secDF; SecD/SecF fusion protein	-	Secretion system	ko02044	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.