Gene detail

Detailed information of ANN24675-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:2454845...2464579
NR annotation: CAH3160408.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN24675-RA

ATGGGCACAAGTCGGGTGTCTTCAAATCTTCCCACTTTTGTGGTGGTTTTTCATCTTATTTTTTCGATCGTCGCCATCGCATTTCTCTCGTACAAAGTTTATTACCTCGATAACCGCGAACTCCCCTACAAAGTTTATAACCTAGAAAGTGAGCTCTCTTCCATTCGAGACAAGATCTCTACCCTAGAGGCGAGTAATGCCATAGGCTCGGTCCAGACACCAACTCCGTTGACCGCAACTCCAAGTAGCGAGACGCAGAGAAGTGGGCGAAATCGTCGAGCAAAGAAAAAGGAGTCCGAATCATCTACGACAGACCAACTCCAGGCAAAGTGTGTGCAGAACTTACTTAAGCATATGCAGGTCACCGACATTGCAGGAAACGGAACTGGGAAGCTTGTCTGCATGAGAGGTCCCCAGGGACCACCAGGATCACCAGGTCCTCGCGGTCAACAAGGAGTACCAGGTACCCGCGGTCAACCAGGAGCACCAGGTCCACGCGGTCGTCGGGGCCGTCCAGGTACAACAGGAAAAATTGGGCCACCCGGCAGAAGGGGTGCGCGAGGGAGCCCGGGAAAGAGCCTTAGTGCAAATGTCACAGTCATTGAGAACATTGTAAGTCAACAATTAAAGACTTACACTGGAGGTGAATACACTCAACCTCAAGGAGATATCACAAAGTTTGCTCCGCCTCGATTTACAAGCAAACCTTCGTCACTCATCTCCTTAAAGGAGGGCGTAAATCTGTCAATTAGCATTTCCATATCCGGAAAACCAACACCAAAGGTCACGTGGTCTGTCCAAGGGAAAAAAATTGGAGACCAACGTCGATACAAGACTACCGCTGACAAGTTTGAGATAACGGAGGTCCGCTTTGAGGACCAGGGAATGATCACGTGCCGCGCTGAAAATTTATTTGGTGTTCAGGAGACAAAAGTAGAACTTACTGTTTTAGGTTCTCCAAGATTCCCTAAATCTCCTCCAGGACAAATGATCGGCTATTTGGGCAAAGAGACAAGACTGCAGTGTAATCTCCTTGGAAACCCCACCCCTAAGGTGCAGTGGGCCAGATCACCCCCTGCACCCCTCCCTGAGGGGCGAACAAGAATAAGGAAAGACGGTCTTTATATAAACAACACTGAAAGTGGAGACGGAGGAGTATATATATGTACTGCGACAAACAAATATGGAATGGTTATTCATGGAACTTTCTTAAAAGTCAAGTCAGTTGAACCTCCTGTATTCACCTCAACACCACCGGCTTCAATCACTGTGCCGAGCATCAAAGCCTCCATTCGAGTCAATTGCTCCGCTAAAGGGTCGCCTCTACCCAAAATCACGTGGTACAAGAACAATGTCAGCATCAATGCCATCAATAATGTGACCACAAACGAAGTCATCAGCGAGATTGAAATCAAACATTTTGAGCCGTCGGACCAGGCCACGTACCAATGCGTTGCTCGTAACATGTATAACGATTCGGTGGTTACAAAGTCAGAGATAGTTTTACCCGACTGTGGCGATCCAGGCAGACCAGACAATGCAGTTGTTATCAGCAAGAATCACTGGGCAGGGGGATATGTCAGGTACCTCTGTCATCCGGGATATACCATGTTTGGTCCCGCTGTCAGAAGGTGTTTGTCCAGCGGAAATTGGAGCGGAAATGAACCAACATGTACCGATAAACCAGAATGTGTTCGTCACATGACGATAGACGATCCAACGAGATACCGTAGCTACAAACATAATAGTAATTTCAATGGTGGTTACCTGTGTGACTATGATCTAGCTGAGGGCTGGTATAAGTTTCTGAACCGTCAGATGTACACAGGTTATGTTTATAGTTCCGGCTACTGCAACACAAAATATCGAGGGTGGTTAAACGGAGGGCATCCCTCAGTTGGAGATGGGATTGTCAGTCGACAAGTTTGTTTTTATTACTCGTCAAGTTGCCATTTTCCCATATACATAAAGGTTCGCAACTGTGGTTCGTTCTATGTCTACAAACTCAAACCAACACCAAACTGTTCTCGTTACTGTACCACCTGA

Transcript

ANN24675-RA

Protein

Uniprot

Uniprot term	Description
Q8NDA2	Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4
A2AJ76	Hemicentin-2 OS=Mus musculus OX=10090 GN=Hmcn2 PE=1 SV=1
Q26614	Fibroblast growth factor receptor OS=Strongylocentrotus purpuratus OX=7668 GN=FGFR PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR050958	Family	Cell Adhesion and Cytoskeletal Organization	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45080	CONTACTIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan