Gene detail

Detailed information of ANN24695-RA in Montipora grisea

Genomic Location: Scaffold_67__1_contigs__length_379612:352248...353132
NR annotation: WP_089941156.1, RluA family pseudouridine synthase [Candidatus Entotheonella palauensis]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O67638	Uncharacterized RNA pseudouridine synthase aq_1758 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1758 PE=3 SV=1
P74346	Uncharacterized RNA pseudouridine synthase slr1629 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=slr1629 PE=3 SV=1
Q45480	Uncharacterized RNA pseudouridine synthase YlyB OS=Bacillus subtilis (strain 168) OX=224308 GN=ylyB PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0234333 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01252 all species →	Peptidase_A8	Signal peptidase (SPase) II	Family	Interproscan
PF01479 all species →	S4	S4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001872 all species →	Family	Peptidase A8, signal peptidase II	Interproscan
IPR002942 all species →	Domain	RNA-binding S4 domain	Interproscan
IPR036986 all species →	Homologous_superfamily	RNA-binding S4 domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for ANN24695-RA. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05569	mnhE, mrpE; multicomponent Na+:H+ antiporter subunit E	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.