Detailed information of ANN24728-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:3713818...3732109
NR annotation: XP_020613842.1, chromodomain-helicase-DNA-binding protein 1-like, partial [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3B7N1Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus OX=9913 GN=CHD1L PE=2 SV=1
Q86WJ1Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens OX=9606 GN=CHD1L PE=1 SV=3
Q7ZU90Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio OX=7955 GN=chd1l PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000968 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00176
all species →		SNF2-rel_domSNF2-related domainDomainInterproscan
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000330
all species →		DomainSNF2, N-terminalInterproscan
IPR014001
all species →		DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR038718
all species →		Homologous_superfamilySNF2-like, N-terminal domain superfamilyInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR049730
all species →		DomainSNF2/RAD5-like, C-terminal helicase domainInterproscan
IPR031053
all species →		FamilyChromodomain-helicase-DNA-binding protein 1-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47157
all species →		CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0140658
all species →		Molecular FunctionATP-dependent chromatin remodeler activityInterproscan
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0003678
all species →		Molecular FunctionDNA helicase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006281
all species →		Biological ProcessDNA repairInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006974
all species →		Biological ProcessDNA damage responseInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN24728-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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