Genomic Location: Scaffold_62__1_contigs__length_415397:411824...412725
NR annotation: WP_152142394.1, ubiquinol-cytochrome c reductase iron-sulfur subunit [Amylibacter sp. SFDW26]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN24775-RA |
| Transcript |
| ANN24775-RA |
| Protein |
| ANN24775-RA |
| UniProt accession | Description |
|---|---|
| P05417 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Paracoccus denitrificans OX=266 GN=petA PE=1 SV=1 |
| Q02762 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Cereibacter sphaeroides OX=1063 GN=petA PE=1 SV=1 |
| D5ANZ2 | Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=petA PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008193 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00355 all species → | Rieske | Rieske [2Fe-2S] domain | Domain | Interproscan |
| PF10399 all species → | UCR_Fe-S_N | Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal | Motif | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006317 all species → | Domain | Ubiquinol-cytochrome c reductase, iron-sulphur subunit | Interproscan |
| IPR036922 all species → | Homologous_superfamily | Rieske [2Fe-2S] iron-sulphur domain superfamily | Interproscan |
| IPR017941 all species → | Domain | Rieske [2Fe-2S] iron-sulphur domain | Interproscan |
| IPR014349 all species → | Family | Rieske iron-sulphur protein | Interproscan |
| IPR005805 all species → | Domain | Rieske iron-sulphur protein, C-terminal | Interproscan |
| IPR019470 all species → | Domain | Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10134 all species → | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008121 all species → | Molecular Function | ubiquinol-cytochrome-c reductase activity | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0016491 all species → | Molecular Function | oxidoreductase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00411 | UQCRFS1, RIP1, petA; ubiquinol-cytochrome c reductase iron-sulfur subunit | EC:7.1.1.8 | Non-alcoholic fatty liver disease | ko04932 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
