Gene detail

Detailed information of ANN24808-RA in Montipora grisea

Genomic Location: Scaffold_42__1_contigs__length_616283:592538...593713
NR annotation: MCG8361370.1, ADP-forming succinate--CoA ligase subunit beta [Kiloniellales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2IIC1	Succinate--CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=sucC PE=3 SV=1
Q2RV33	Succinate--CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=sucC PE=3 SV=1
B8JAE0	Succinate--CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=sucC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001643 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442 all species →	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00549 all species →	Ligase_CoA	CoA-ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016102 all species →	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR013650 all species →	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR005809 all species →	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR013815 all species →	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR017866 all species →	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR005811 all species →	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815 all species →	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0004775 all species →	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006104 all species →	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709 all species →	Cellular Component	succinate-CoA ligase complex	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01903	sucC; succinyl-CoA synthetase beta subunit	EC:6.2.1.5	Carbon fixation pathways in prokaryotes	ko00720	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.