Gene detail

Detailed information of ANN24810-RA in Montipora grisea

Genomic Location: Scaffold_7774__1_contigs__length_24134:8418...13499
NR annotation: XP_019856896.1, PREDICTED: leucine--tRNA ligase, cytoplasmic [Amphimedon queenslandica]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24810-RA

ATGGAAGAGTTTGGCTTCCCTCCTCAGTTCCCACAGCCTGGAGAGGATGAGGGCGAGGAGGAGATCTCGACTGAACCTCTGGACCCTAGCAAACTCCCAAAGAAGGTAAAGGCAAAAGTTGCTGCGAAGGGTGGAGATGCACTCTATCAGTGGGAGATCATGAGGGGTCTTGGACTAGATGACAAGGAGATCAAGAATTTTACTGACCCCATCCACTGGCTGCACTACTTCCCTCCACTTGCCAAAAATGATCTCAAACTGCTAGGAGTCAGGGATACAGAGTATGACCCTCCCCCCTCCCCCCAGGTGGATTGGCGACGGTCGTTCATCACAACAGATGCAAACCCGTACTATGACTCATTCGTCAGGTGGCACTTCCTCACACTAAAAGAGAGAGGAAAGGTCAAGTTTGGGAAAAGGTTAGTACCCCATCCTGTCCCTTGCTGGATAAAAGTTGATTCCCCCCATGCCCCCAGGCATGCCATCTACTCTCCCATGGACCAGCAGCCTAGCATGGATCATGACCGTGCTAGTGGTGAGGGAGTTGGACCACAAGAGTATACTCTTATTAAGATGAGGGCTATTGAGCCATACCCTGAGAAACTCAGCTCTCTGGCAGGGCAGGCAGTGTTTCTGGTGGCAGCCACCCTGCGACCAGAAACCATGTATGGTCAGACCAACTGCTGGGTGAGACCTGATATGGAGTACATTGCCATCAGAGTGACAAGTGGGGAAGTGTTCATCTCCACTAGGAGGGCAGCCCTCAACATGGCGTACCAGGGTTTCACTGCAGAGTTCGGGAAGGTAGAACCTGTCCTCACTCTCAAGGGGCAGGATATCATGGGTCTCCCTCTGAAGGCCCCTCTCACTTCCTATGATATTATCTACACACTGCCCATGCTCACTATCAAGGATGACAAAGGCACTGGAGTCGTAACGTCTGTTCCATCAGATGCACCAGATGACTATGCAGCTCTAAGGGATATTCAGAGAAAGAAGGCGATGAGAGAAAAGTTTGGAGTCACAGATGAGATGGTCCTACCTTACCAGCCAGTTCCCATCATTGACATCCCAGACCTAGGCAACCTCTCGGCAGTTACTGCATGTGAACAGCTGAAAGTTGCCTCTCAGAATGACAAGCAGAAGCTGGAAAAGGCCAAAGAGATGACCTACCTCAAGGGATTCTATGAAGGGGTGATGGCTGTGGGAGAGCACAAAGGAGTAAAAGTTCAGGAGGCTAAGAAGTTGATCCAGACAGCCATGGTTGCTAATGGTGAGGCAGTTCTTTACCAGGAGCCAGAAAAGACAGTGGTGTCTCGCTCTGGCGATGTCTGCGTTGTGGCTCTCTGTGACCAATGGTACCTGGACTATGGTGAACCCAACTGGAAGAATGCTGCTTGCACTGTGCTGGAGGGACTGCGGACTTGTGTTCACTCCCACAGCTATTCCGAGGAGGTTAGACACAATTTCCAAGGCACACTGGAATGGCTTCACGAGCATGCTTGCTCACGATCCTTTGGCCTTGGTATGACCATAGACAAATCTGCTTGCACACACATCCCGTGGGATCCAAAGTACATGATTGAGTCTCTCTCAGACTCAACCATCTACATGTCATTCTACACAGTGGCACATCTGCTGCAAGGTGGCGTGGTCAACGGCTCAACACCTGGCCCTCTAGGGATCAGGGCAGAGCAGATGACCAAAGAAGTTTGGAACTATGTCTTCTTTGGGGGAGAACTGCCAACAACAGAGATATCTCCTAATGCTCTCAGGAAACTCCGCCATGAGTTCAATTACTGGTACCCTGTGGATCTGCGTGTATCTGGGAAGGACCTAATTCAGAACCACCTCACCTATTACCTCTACAATCATCAGGCTATGTGGCCCCACCCATGCCGAGGTGAGAAGGGGAATGATGGAGATGTGTGCCGGTGGCCTGTTGCTGTGAGAGCCAATGGACACATCCTCCTCAACTCTGAGAAGATGTCAAAGTCAACGGGAAACTTCCTCACTCTCAGAGAGGCAGTTGAACGGTTCTCTGCAGATGGTACTCGTCTTGCACTGGCTGATGCAGGAGACACTCTGGAAGATGCTAACTTTGTCTTCGAGATGGCAGACGGAGGACTACTCCGCCTCTACTCCCAAATTGACTGGGCCAAGGAGATGGTGGGGTCAAAGGACACAATGCGTAACAATGGCCCAGACAACTACACCTACCAGGATCGGGTGTTTGCCAATGAGATCAATCATATTATCCAGCTCACTGACAAACACTATGAAAATATGATGTTCCGAGATGCCATCAAGACAGGCTTCTATGATCTACAGGTACACAACCTTTCATCCCTGAAGGCTCTTTCTGCTAGGGACCGGTACCGAGACATTACTGCTGCTGGAGGGGGTATGAACTGGCAACTTGTTGAGAGGTTCATTGAGGTTTGTTGCACAATCCTATTAGTACCTCCTCACCTCACAGCTCTTGTACAAGCTCTATTGCTATGTCCAATCTGCCCCCACATTGGGGAGTACATCTGGGGCCTCATTGGAAAGCCGGGCAGTATCATGGAGACTTGCTGGCCTGAAAGTGGTGAGGTTGACTACACACTACTGAAAGAGGCTGACTACCTGTCCTCTGTTGTGCATGAGTTCAGAGTCCGTCTCAAAAAGATGGTTGACATGAGGGGCAAGGTAGAGAAAGATATACCCATGACAAGGCCTGATTATGGAGTGATCTATGTGGCTCAGGAATACCCATTCTGGCAGCAGATAATCCTCACTAAACTCAGTGAGCTACACAACAAGGTATGCAGCAGTAATCTCTCTACACAGCGTGTACCTCTACCTCCCTCTGAGGACAACTCACTTCCTCCTAACAAGGTTATCCTGGAGACACTCAAGTCCATCGACTCTCTCAAGCCCTACATGAAGAAACTCATGCACTTTGTGCAGTATATCAAGCAACGTTTGGAGACCAAAGGTACTGAAGCTCTGGACCAAACCCTTCCATTTGATGAGAAAGCAACCCTGGAGAGAAATCTCAACTACCTCATACGTTCACTAGATTTGAAGGAAGTGTGGGTTGAGCCTGTGGCCCATGCAACAGAGCCTAAGGTGAGGGAGGAATGTCAGCCTGGTAAACCCATCTCCGTGTTTGCTGGAGAATCTCATAAACGTTGTGTCCCCTACTTCTCCATACAAATTCCTATCTACGACGAGGACAGTTTTGGAAGGGTAGTGGACCGGATACGACGTACCAGTGGAGTGCCAGGCAACATCCCCATTGAGATGAGACGCTATGAGAAAGATGCCCGGTCCATCCCTGTGACTGGAGAGAGCAGTGGAGTGGTGACCATTGACAAGGAATCCTCCTTCAATATCAGGGAAGGTGACCTAACTCTGTGGAACCCAGGGAGCAGCTGTAATGGTGTTGCTGTGGGATCACATATCCAGTATCTTGTTCACTGA

Transcript

ANN24810-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R614	Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=LARS1 PE=2 SV=1
Q9P2J5	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=LARS1 PE=1 SV=2
Q8BMJ2	Leucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Lars1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004493 all species →	Family	Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR009008 all species →	Homologous_superfamily	Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45794 all species →	LEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004823 all species →	Molecular Function	leucine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006429 all species →	Biological Process	leucyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0002161 all species →	Molecular Function	aminoacyl-tRNA editing activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01869	LARS, leuS; leucyl-tRNA synthetase	EC:6.1.1.4	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.