Gene detail

Detailed information of ANN24899-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:7425036...7430782
NR annotation: XP_020613521.1, tetratricopeptide repeat protein 28-like [Orbicella faveolata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN24899-RA

ATGGCGAGGAGTCCAACCAAAGCTGGAAAGGAAAGTAACGTCACGCAAGGTGGTGAGGAAAGTGACGTCACCCCAGCTGGTGAAGAAAGTGACGCCACTCAAGCTAATGAAGAAAGTGACGTCGCGCCAGCTGTTGAGGAAAGTGGCGTCACGTTAACTGCTGAGGAAAGTGGGGTCACGCAAGCTGAAGGGGAAAGTGACGTCACGCCAACTAGTAAGTATAGTGTCGCGTTGCAGGCTAATGAAGAAAGTGACGTCACGACGACTGGTGGGGAAAGTGGCGTCACGCAAGCTGCTGAGGAAAGTGACGCCACCCAAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGCAGAAAGTGGCGTCGCCCAAGCTGCTGAGAAAAGTGACGCTACCCCAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTGACGCCACCCCAGCTGGTAAGGAAAGTGCGTTCACACAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGCAGAAAGTGGCGTCGCCCAAGCTGCTGAGGAAAGTGACGCTACCCAAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTGACGCCACCCCAGCTGGTAAGGAAAGTGCGTTCACACAAGCTGTTGAGGAAAGTGACGCTACCCCAGCTGTCGCAGAAAGTGGCGTCGCCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTGACGCCACCCCAGCTGGTAAGGAAAGTGCGTTCACACAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCACAGAAAGTGGCGTCGCCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGGTAAGGAAAGTCCGTTCAGACAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTCTCGCAGAAAGTGGCGTCGCCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTAACGCTACCCCAGCTGGTAAGGAAAGTGCGTTCACACAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGCAGAAAGTGGCGTCGCCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTTAAGGAAAGTGCGTTCACGCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGTAGAAAGTGGCGTCACGCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGGTAAGGAAAGTGCGTTCACGCAAGCTGCTGACGAAAGTGACGTTACCCCAGCTATTGTAGAAAGTGACGTCACCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGTAGAAAGTTGCATCACCCAAGCTGCTGACGAAAGTGACGTTACCCCAGCTATCGTAGAAAGTGGCGTCACCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGTAGAAAGTGGCGTCACCAAAGCTGCTGTGGAAAGTGACGCTACCCCAGCTGTCGCAGAAAGTGGCGTCACCGAAGCTGATGAGGAAAGTGACGCTACCCCAGCTGCCGTGGAAAGAGGCGTCACCAAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGTCGTAGAAAGTTGCGTCACCCAAGCTGCTGAGGAAAGTGACGCTACCCCAGCTGCCGTGGAAAGTGGCGTCACCCAAGCTGCTGAGGAAAGTGACGCTATCCCAGCTGTCGTAGAAAGTTGCGTCACGCAAGCTGCTGAGGAAAGTGACGTCACCCAAGCTGGTAGAGAAACACCGGAGTTTGATGAAGACACCTTAAGAGCCATAGCAGAGGTTTACAATAATGAAGGTAATGAGAGATACAAACAGGAAGATCTCAGCAACGCCATACACTTCTACACGGAGGGAATTCAAATGAACTGCAAGGATGAAGAACTGGAGGCCGAATTGTACAGTGGCAGAGCGGAAGCATACTTTTGTTTAGGAAATTATAATGATTCACTGAATGATGCTAAGGTTGCTAATGACTTACAGCCATCATTGGTAAAGGTGATTGTGAGAGGAACAAGTGCTTGTGTTCAGCTGAATCAGTTTGAGGAAGCCATCACGTGGTGTGAAAAAGGATTAGCAATTGACAAAAACAATCAGATGTTGTTGGAATTAAGAAGCCGGGCTGTCAATGAACAAAACAAGCTACAAAATGCAGCCGGAAAGGACGATGCAAATGAATCTGACGTCACAACTGCTACTGAGAAATCACTGGATAATAATAATGAAACTACTTTAAGAGCAAAAGCAGAGCTCTTTCAGAATCAGGGCAATGACGAGTTAAAAAAAAAAGAGTTCAGCAAAGCCATATTGCTTTACACAAAAGGAATCAATGTGGACGTCAAAGATCAAGAACTAAAGGCCAAACTGTACAGCAACAGAGCAACAGCACATTTTAATCTGGGTACCTTCCATGACTCGCTGAGTGATGCAAAAACTGCCACAGACTTACAACCGTCTTATGTCGAAGCGATTGTTACAGGAGCAAGTGCTTGTTTTCAGCTGAATCAGTTTGAGGAAGCCATCAAGTGTTGTGATAAGGGATTAGCAGTATCCTTCATTGTACACTAA

Transcript

ANN24899-RA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000533 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181 all species →	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF21009 all species →	SBSN_GxHH_rpt	Suprabasin, GxHH repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR049502 all species →	Repeat	Suprabasin, GxHH repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46035 all species →	TETRATRICOPEPTIDE REPEAT PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0030544 all species →	Molecular Function	Hsp70 protein binding	Interproscan
GO:0051879 all species →	Molecular Function	Hsp90 protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN24899-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.