Gene detail

Detailed information of ANN25002-RA in Montipora grisea

Genomic Location: Scaffold_120__1_contigs__length_221399:199083...202944
NR annotation: PCJ22476.1, DNA topoisomerase IV subunit A [Rickettsiales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN25002-RA

ATGAATGATAAAAACCCAAATATTGTAAATGTTGATTTTAGTGACGCTATATCTGAGCGTTATCTTTCTTATGCCTTGTCAACTATAATGTCTAGGTCTTTGCCGGATGTGCGCGATGGTTTGAAGCCGGTACATAGGAGGTTGCTCTATGCGATGCTTAAATTAAAGCTAGATCCTAGTGCGCGTTATAAAAAATGTGCTAGGGTTGTTGGTGATGTTATAGGTAAATATCATCCCCATGGAGATGTTGCTGTTTATGATACTCTTGTCCGTTTAGCTCAAGGCTTCTCGCTGAGATATCCCTTAATTGATGGACAGGGTAATTTTGGTTCTGTTGATGGTGATAATGCGGCGGCGATGCGTTATACCGAGTCTAAAATGACTGAAATTTGTACATTATTAATGCAAGATCTTGATAAAGATACGGTTGATTTTGCTTCTACTTATGACGATTCTGATAGTGAGCCCGTGTTGTTACCTGCCCAGTTTCCTAATCTTTTAGCAAATGGTTCAGAGGGGATAGCTGTTGGTATGGCCACTAGTATTCCTCCGCATAACCTTCATGAACTATGTGAAGCTTTGATTTTTTTAATTGATCATCAAAGCACAGCTAGTTGTACAGATATGCTCCGCTTCATAAAAGGTCCAGACTTTCCAACGGGCGGTATAATTATTGAAAACCAAGACGTAATTGATAATGCTTATCAAACGGGCAAAGGAAGTTTTAGGGTTAGAGCAAAATGGGAAAAAGAAAGTTTTAGTCATGGTTTATATCAAATAGTTATAACTGAAATTCCATATCAAGTTCAAAAATCAAAATTGATAGAACAAATAGCCTTGCTTCTAAAAAACAAAAAAATACCCTTAGTTAGTAATATTAGAGATGAGTCTTCAGAAAAAATTCGTATTATTATTGAACCAAAGGGGCGCAATTGCTCGTCTGAAATGATTATGGAATCATTATTTAAGCTTACTGGATTAGAATCCAAGGTGCATCTTAATATGAATGTCTTGAGTTCAAAAAGAGTGCCAAAAGTAATGAATATTATAGAAATACTACAAGAGTTTATTGCTCATCGGCAAGAAGTTGTAATACGTAGAACTAAATACCAAATTGACAAAATAAAAAACAGATTAGAGATATTAGAAGCCCTAAAAATAGCTTATTTAAATATTGATGAGGTTATTAAAATCATTCGAGAAAAAGATCATCCAAAGCAAGAAATGATTACTAAATTTAAAATTAGTGATGTGCAAGCAGAGGCTATTTTAAACATCAAGCTGCGTGCGCTTCGCAAACTAGAAGAAGAGCAAATTAACGCTGAAAACAATGCGTTAATTAGAGAGCATGAGGATTTGAATAAGATTTTAAATGATTCAAAACAATTATGGCGAGTGGTAAAAAATGAGCTTAAAGTGGTACAAAAAAGATTTGGTCAAAATACGGAAATTGGTGCTCGTAAAACCACGATTAAGGAAAATGGAAACGTAGCACAAATTGTTGATATTTCAGCCTTTATTGAGAGAGAAGCTATTACAGTTATATGTTCTAAAATGGGTTGGATACGCTCTATGAAGGGTCACAATTTAGATTTATCATCTATAAAGTATAAAGAGAGTGACGAGCAGGAACATATAATTGAAACTTATACCACTGATAATATAATAATATGCTCAGCAGCCGATCATTCTCTTGTTCCTAAAATAGTGGATTATTCCAAAACTAGAATATTTGTTGGGAGCTCTGATTGTAAAAAACCTTATGAGACATCAATATTAAATATATCTGGTATGAGTTTCGGAGCTCTTAGTCCAAACGCCATACGTGCTTTAAATAAAGGTGCTTATATTGGTAAGTTTGCTCATAATACCGGTGAAGGTGGTATTAGTCCTTATCATGTTGAGGGTGGAGGAGATTTAATTTGGCAAATTGGCACCGGTTATTTTGGTTGCAGAAAGAAGGATGGAGGTTTTGATTCTGAGTCTTTTAAAGAAGCTGCAACTAAAGATATAGTAAAAATGATAGAAATAAAATTATCTCAAGGTGCAAAACCTTCTCATGGTGGTATTTTACCAGCTATAAAAGTTACAGAAGAGATTGCTAAAATACGTATGCTTGAAATGGGGGTTGATGCAATTTCTCCACCAATGCATTCGGAGTTTTCTGATCCTGTTGGTTTGTTAAATTTTGTAGCAAGGCTACGTAATTTATCTGGTGGTAAACCTGTTGGGTTTAAGCTATGTATAGGAAATAAAATTGAATTTATGAATATATGCCGTGCAATGATAGAAACGGGCATTAAACCAGATTTTATTGCGGTAGATGGTGCAGAAGGTGGAACTGGTGCTGCTCCTGTTGCCTTCTCTAATCGCTTAGGTACTCCAATTAATGAGGCAATTTCTTTTGTTAATAATTGTCTTGTTGGGGTTAATCTTAGGCAAGATATAACGCTTATTGCTAGTGGAAAGATAGCGACGGGCTATGATATGGTGACAAAAATTGCACTAGGTGCAGATATCTGCAACGCAGCAAGAGCCATGATGTTTGCCCTTGGTTGTATACAATCCTTACATTGTAATACGGATGCTTGTCCAACTGGCGTTGCTACTCAACAAAAATCTCGTTGGTCTTCTTTGGACGTTCAGGATAAATCTGTGCGTGTTGCAAATTTTCATAAAAACACAATACATTCTTTTTTAGAAATAGTTGGCGCTCTTGGAATAGATGATCCAAAGGATCTGAATCCTTCGCATATAAGAAAATATGTCGATATAAATACTAGCAAAGGATATGATGATATTTATCCACAATTAAAGCAAGGAGAGTTACTCAAAAGTAACGCGGTTGGAGTATATGCTGATATGTGGAAATTATCTCAAGCCAAGGCTTTCTAG

Transcript

ANN25002-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1RGX8	DNA topoisomerase 4 subunit A OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=parC PE=3 SV=1
Q4UNA0	DNA topoisomerase 4 subunit A OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=parC PE=3 SV=1
Q92JH0	DNA topoisomerase 4 subunit A OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=parC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0021803 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00521 all species →	DNA_topoisoIV	DNA gyrase/topoisomerase IV, subunit A	Family	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013760 all species →	Homologous_superfamily	DNA topoisomerase, type IIA-like domain superfamily	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR002205 all species →	Domain	DNA topoisomerase, type IIA, domain A	Interproscan
IPR035516 all species →	Homologous_superfamily	DNA gyrase/topoisomerase IV, subunit A, C-terminal	Interproscan
IPR050220 all species →	Family	Type II DNA Topoisomerases	Interproscan
IPR013758 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, domain A, alpha-beta	Interproscan
IPR013757 all species →	Homologous_superfamily	DNA topoisomerase, type IIA, alpha-helical domain superfamily	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43493 all species →	DNA GYRASE/TOPOISOMERASE SUBUNIT A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003918 all species →	Molecular Function	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006265 all species →	Biological Process	DNA topological change	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0009330 all species →	Cellular Component	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex	Interproscan
GO:0006259 all species →	Biological Process	DNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN25002-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.