Gene detail

Detailed information of ANN25006-RA in Montipora grisea

Genomic Location: Scaffold_1346__1_contigs__length_56768:28270...40087
NR annotation: XP_011408742.1, PREDICTED: ATP-binding cassette sub-family A member 2-like [Amphimedon queenslandica]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25006-RA

ATGGGTGCAGGTCGTGGGTTGTGGTCCGGTACGAAGACCTGGATTCATCAGTTGCAGTTGCTGCTGTGGAAGAACGCTAAACTCAAGTGGCGAAGCGGATCCATCTATGGCGTACCGATGTACTTGTATATTCCAACTAATGGAGTCCTTGGCAATTTGGTTAGGATGTCCACTAAGTGCACCCTTCCAAGGAGTGCGGACAAGTTCAAAGAGGAGCCATGCACAAGAGCCAGGATGCTGGTTACAATGCAGCCATACTCAGTACTGCATGTGCATGTTCATGTGCTGAATGTAGATCTTGGGCTAACGATGTGGGAACTTTACTGTAATCAGGGCCATGCTACCCCTCATGGGACTGCTTGGTGCTTGGCCGTGTTTCGAGCCAATGCCCTCCCCTCGACTGGTGCCCTCCCGTTCATGCAGTCACTGATGTGTGATGTGGGTAGAGATGCCACTGGAGAGAGAGACGACATGCCACAGTATCCCAATGCAAGTGTGAACCAGCTGTATGGCATTCTGGATGAGGTGGGATCATGGAATGGGAGCTGGCAGAACATCTGTTCCAGTATCTATGACCTGGCAGACCTGTCAAACCAGGCTGACTGTATCACCGAACAGGACAGAATTGAGAACTGTACTCTGTCGGATGGTGAGCGGGTTGTGGGGGTGTGGCAGGAGATGATTAAAAATACAGGTTCCCTCCCAATTTCCTGTGCCCTCAGTGACCCTGCAGAGTTCAGGGACGTCCTGACTGAGGTATGGGGACTCACAGACGATGCTGCCAACATCATACTCAACTCCTCTGTTCAACCACAATGGGTTTGTTTGTGCTACTCCCTTCTTCCCTTCCCCATGTGCAGTGTTCTAATTCTGACATACTGGAGATCCCTTGACCTTCTGAAACTTCAGGAAGCTGTGGAGATTTCTCAGCAGCTGGACGGTTTGACCTTAGACTTCTCCAACACGAGCCTTTGGGAGTTCTTCTGTGGTGACCTGGAATTCGTACCAGAGAATACGTTCATGGCGGACTTCATTAACAGAGCCATACAGGGGAGACTCTTTTCAGCAAGGACAACTATAATTAGGTATCGGCTAGTTCTGTACACACGCTCTATCACACGATGGCTACCTACTCAGAGTTCAAGGTTAGCTGAGGACCGGCATGAGCGTGAGATTGAGGAGGAGGATGGGGAGGGGAGTGGGGAGAGTGGTAGTGGGGACATGGAGACCGAGAAACTCCACATTGCTGTGAAGGTGCTGTATACCCCTGACACACCCCTAACACGATCCATCATGGAGAAAGCGAATCGGATTTTCAAGGCAGCTGAGGAGATTGAGGGGTGGGCAGGGCAAGTGTCTAATTGCTCCCAGTTCTTCTTGGATACCTTTCCTCTGGACAGTCCTGTGATACAGAGGATCAATGATGTATGTGAGGGGAATATGTACACTGTGTGTTTGTTGACTGAGACTGTCAACTTCCTGGTTGCTAATGGCTCTCCAGCACTACAAGACTTGCAACGGTTCAACGACGGCAACCTAACATGGGCCGACAACTCCTCTCTACTACAGGCCCAACAGCTACTAAACCAAAACAACCCGGACAACATTTGGGCCATAATGCAAGAGACTCACGATACAGCAGAGTACATCCGGTCCAACCTGTCACAGGTGGACTGGGAGATATTCATGCCACGGTCATCAGAGTCAGACATAGAGGAACTGGCAACAGATTACGTAAGGCAAAAGGAGTTAAATATCACTACAGTAGCAGCCGCAGTGGTGTTTGACGACTTGGACAAGGAGAAGAGTGGGGAGGGGCTGAGACGGGCCACCATTAGGATTAGGATGAACTCCACCTACGTACATGACACAAGCAAGATCAAAAAGAGTGTCTGGCAGCCTGGTCCTGACAGAGATCTGTGGAAGCAGAGGTACCTGCTGGCATGGTTTATCTTCTTCCAGGACATGGTGGAGCACGCTATCGCTGAGGAGATAGCCGGGAAGAGAATAGCTGCTCCAGGAGTCTACCTGAACGAGATGCCCTACCCATGCTACAATCTGGACTTGTATGTACTAGCCTACAGTAAAATGGTTCCTAATTGCTCCAGGTTCATGGGTGCAATGCTGTGGATCCTCCCCCTCTCCATGATCTTTGCGTGGCTGTTCCCCGTTGCCATGACAGTGAGGGCTGTGGTCAGAGAAAAAGAAGCAAGGCTGAGGGAGTACATGCGAATGATGGGTATAGGAGAGGGTGTCTTGAGATTGTCCTGGTTTATCACTTCTGGAGCCATTCTGTCTGTCTCTGTCATCCTCATCACAGTCATACTCAAGGCTGGAGGCATCCTCCCATACTCTGATGGCCTGCTGGTGTTCCTGTTCCTCCTCCTCTATGCCATGGTCATGATCAGTTACAGGTTGAGCCTTTGGGCTCCCCTGGCATTTGGTCTTGGTGCAACATACCTTGTGCAGTATGAAATGGAGCAGATTGGCCTGCAGTGGAATAACATCAATCAGTACTCGATACAAGATGATCATCTAACATTCCTAACAGTGTGCATCCTACTCATCTTTGACACTATTCTCTACATGACACTGACGTGGTACATTGAGGCGGTTTTCCCGGGAAAATATGGGGTGGCAAAACCCTTCTACTTTCCCTTCCAGCCCTCCTATTGGCTGGGTCAAAAGGGGCGTGGTTCTGGGTTGCTAGGAAAGCATTGGTCATCACTAAGGAGTGGATCAATTCACCATGTGACACTTGAGGAGGAAGAGATGGAGATGACATCTGCCGTGGGTTCAGAATCTGAGCAGCTGATTGGTGGTAGCGGTGTTGAGGGAGGGGGCGAGGGTGCAGTGCGTGAAGATGAGCCAGACCACCTGACTCCAGGCATTGCCATTCGTAGCCTATCCAAGCACTACACTTCAGGGTGGTTCTGGAACCGGAAGAAGGTTGAAGCAGTAAAGGATCTTTCCCTCAATTTCTATGAGGGACAGATCACTGCATTCCTTGGACACAATGGAGCTGGGAAGACTACCACCATTTGTTTGTTGGGTTTCAACCTTCTTGAGACTGTAGGCGGCATTGAAGCTAGTTGCTACTCTCCCTTTCTTCCTCCAGTCCTGACTGGACTGTTTGAACCGACCTCTGGTACTGCCAGTATCTATGGAAACAGTATTCGCAAAGACATGGATGTCATTAGGCAGTCGTTGGGAATGTGCCCACAACACAACATTCTCTTTGACAGGTGTGCTAATAACTCTCCTCTCATGTATTGTACTGGTATGATGTTACATCATCCTTTGTTCTCTTCTTCTCTCGCTCTCACACACACATACACACAACATGTACAGGTTGACAGTGAAGGAACACCTGTTATTCTATGGACGAATGAAGGGGTTGAGTAG

Transcript

ANN25006-RA

Protein

Uniprot

Uniprot term	Description
P41233	Phospholipid-transporting ATPase ABCA1 OS=Mus musculus OX=10090 GN=Abca1 PE=1 SV=4
O95477	Phospholipid-transporting ATPase ABCA1 OS=Homo sapiens OX=9606 GN=ABCA1 PE=1 SV=3
Q9ESR9	ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus OX=10116 GN=Abca2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12698	ABC2_membrane_3	ABC-2 family transporter protein	Family	Interproscan
PF00005	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026082	Family	ABC transporter A	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013525	Domain	ABC-2 type transporter, transmembrane domain	Interproscan
IPR003439	Domain	ABC transporter-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19229	ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005319	Molecular Function	lipid transporter activity	Interproscan
GO:0006869	Biological Process	lipid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0033700	Biological Process	phospholipid efflux	Interproscan
GO:0042626	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0055085	Biological Process	transmembrane transport	Interproscan
GO:0090554	Molecular Function	phosphatidylcholine floppase activity	Interproscan
GO:0090556	Molecular Function	phosphatidylserine floppase activity	Interproscan
GO:0140359	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04979	TRPM4; transient receptor potential cation channel subfamily M member 4	-	Ion channels	ko04040	deepkoala