Gene detail

Detailed information of ANN25028-RA in Montipora grisea

Genomic Location: Scaffold_45__1_contigs__length_568182:417000...418944
NR annotation: MCE2395664.1, ADP-forming succinate--CoA ligase subunit beta [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
C5D8V2	Succinate--CoA ligase [ADP-forming] subunit beta OS=Geobacillus sp. (strain WCH70) OX=471223 GN=sucC PE=3 SV=1
Q5L0N7	Succinate--CoA ligase [ADP-forming] subunit beta OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=sucC PE=3 SV=1
Q65JP0	Succinate--CoA ligase [ADP-forming] subunit beta OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=sucC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08442	ATP-grasp_2	ATP-grasp domain	Domain	Interproscan
PF00549	Ligase_CoA	CoA-ligase	Domain	Interproscan
PF05721	PhyH	Phytanoyl-CoA dioxygenase (PhyH)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005809	Family	Succinate--CoA ligase-like, beta subunit	Interproscan
IPR016102	Homologous_superfamily	Succinyl-CoA synthetase-like	Interproscan
IPR017866	Conserved_site	Succinyl-CoA synthetase, beta subunit, conserved site	Interproscan
IPR013815	Homologous_superfamily	ATP-grasp fold, subdomain 1	Interproscan
IPR011761	Domain	ATP-grasp fold	Interproscan
IPR013650	Domain	ATP-grasp fold, succinyl-CoA synthetase-type	Interproscan
IPR005811	Domain	ATP-citrate synthase/succinyl-CoA ligase, C-terminal domain	Interproscan
IPR008775	Family	Phytanoyl-CoA dioxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11815	SUCCINYL-COA SYNTHETASE BETA CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006099	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0004775	Molecular Function	succinate-CoA ligase (ADP-forming) activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006104	Biological Process	succinyl-CoA metabolic process	Interproscan
GO:0042709	Cellular Component	succinate-CoA ligase complex	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01903	sucC; succinyl-CoA synthetase beta subunit	EC:6.2.1.5	Carbon fixation pathways in prokaryotes	ko00720	deepkoala