Detailed information of ANN25035-RA in Montipora grisea

Genomic Location: Scaffold_53__1_contigs__length_456579:27053...28813
NR annotation: MYB93502.1, UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C6E5B9UDP-3-O-acylglucosamine N-acyltransferase OS=Geobacter sp. (strain M21) OX=443144 GN=lpxD PE=3 SV=1
B5EEW8UDP-3-O-acylglucosamine N-acyltransferase OS=Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem) OX=404380 GN=lpxD PE=3 SV=1
Q39T44UDP-3-O-acylglucosamine N-acyltransferase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=lpxD PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0019989 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04613
all species →
LpxDUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FamilyInterproscan
PF00132
all species →
HexapepBacterial transferase hexapeptide (six repeats)RepeatInterproscan
PF03938
all species →
OmpHOuter membrane protein (OmpH-like)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007691
all species →
FamilyUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxDInterproscan
IPR005632
all species →
FamilyChaperone protein SkpInterproscan
IPR024930
all species →
Homologous_superfamilySkp domain superfamilyInterproscan
IPR020573
all species →
DomainUDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat regionInterproscan
IPR001451
all species →
RepeatHexapeptide repeatInterproscan
IPR011004
all species →
Homologous_superfamilyTrimeric LpxA-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43378
all species →
UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009245
all species →
Biological Processlipid A biosynthetic processInterproscan
GO:0016410
all species →
Molecular FunctionN-acyltransferase activityInterproscan
GO:0051082
all species →
Molecular Functionunfolded protein bindingInterproscan
GO:0016747
all species →
Molecular Functionacyltransferase activity, transferring groups other than amino-acyl groupsInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K02536lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferaseEC:2.3.1.191
Lipopolysaccharide biosynthesis proteinsko01005deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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