Gene detail

Detailed information of ANN25114-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:12556263...12561112
NR annotation: CAH3114377.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25114-RA

ATGGCCGTTGATCCGGTTGTCCAGGACTTCATTGCTCGTTCTATGGCTGAAAATAACAGATCTTTGATGTCGGAAATTTCGACATTAATAACAAATTCCGTTGAAAGCATTAAGCGCTCGAATTCCGAAGCCGTTGAAGATCAACTAAGGGAGATTAAGAAAATCCGACGCGAAGAGCCGAAGTCTTTCAAACGTAAAGGAAATGAAGTACAGTACAAGTTTAATGCCAAAATCCAAGACTCTATTGACGAGGCCAAGTCGTACCTCGAGTCCAACGCTGTCGACAAAGCCAAGGAGTCCCTGACCGAAGGTACGTCTCTGCTTACAGAAAGGCAGAAACTTATTCTCCTAGCAGATAAGTCAGAGTTTGGTTGGAAAACAGTTCAAGAATACACTCAACACGAATTAGCGGAGGACGACCAGGATGGAAAGAAAATTCGCCGCGCCGAGGAAAGGGCTGAGAAATCTTTGAAATCAATTGCCGCCAAGAAGTCAAAAAAGCAAGGTGGATTCCCCAGTTCTCCTAGTCTTCCACAATCTTCCCGTGCTCCATTTCAACGCAGTTCATCCTTTACATCTTGGCGCTATCGGCAGCCGTTCTCTTCACGTTCGATCGTGGATCTTCCTTCAAAACCTGGGAGCTGTTTTGCCTGCGGAAAATTTGGTCATTGGAGGGCTCAATGTTCGCTGGTTCGTACTTCTACTGCTTCTAAATCCAGGTTGAAAGCATCCATTGAGTACTGGCGTTTCATCGGCGCTCCCAAGTTTATTTTGGATATTATTTCTGATGGATATAAAATTCCTTTCATCACCACTCCGCCTCCTGTCCATCTTAAAAACAATGGTTCTGCTTTGGAACATTCAGATTTCGTTAACGATGCTATTTTAGAGTTGCTGCAGGACAATCGTATTGAAGAATTAACAACTCCGCCGGAGATTATCAACCCTTTAACTGTTTCTGTCCAAAGTTCTGGTAAAAAGAGACTGATATTGGACTTAAGGCATATAAATCTCCATGTTTTCAAGCAAAAGTTCAAGTGTGAAGGCCTGCATACTATTAGAGATATTTTCTCTGAGGACTATTTTGTTTTTTCTTTTGATCTCAAATCTGGATACCACCATGTGGATATTTTCCCGGATCATCGGAAATTTTTGGCATTTTCGTGGCATTTTGGCACTAATTGCGTTAGATATTTTCAATTTACTGTGTTGCCATTCGGTCTTTCCAGCGCGCCTTTCATTTTTACGAAGTTGATTAAGCCATTGGAAGCATTTTGGAGGTTGCAAGGAATTCCTATAGCTATTTTTTTCGATGATGGTGTCGGCGCTGGTTCCTCTCGCGATATTGCGGAATCTAACGGTTCTGTCGTCCGCTCAAGTCTTGCTCAATGCGGTTTTCTAGTTAATCAGGAGAAGTCTGATTGGAATCCTAAGAACATTTTTTCTTGGATTGGCTTCATTATTAACACTCACTCGGGCTTAATTTATGCGACTGATGCGAGAATCGAAAGCCTTTGTTGCGATCTTAACGAGCTTTGTGATGATTTTGAGGTGTCAGCTTCCATCCATGTTAAAAGGCTTGCGTCTATTGTTGGCAAGATTATTTCTTTATCTGCTTGTTGCGGTAATGTCACTCAAATTATGACTCGATATTTACATCTGATTGTCAATTCACGAGATTCATGGCATTCGATTGTGTTTATTCAGGACCAAGCCAAGAAAGAGCTTTTGTTTTGGAGAGACAATTTGAGAAATTTAAATGGTGTTTCATTTTGGTCTACCCCATTCGTTCCTTCCAAGATTGTCTTCTCCGACGCTTCTTCCACGGGATGTGCTGCCTACATTCAAAGTTCTTCCTTACTTTTTCACAGGAATTGGTCTGCAACTGAGTCGCTAAAGTCTTCTACTTGGAGGGAACTAGCCACGGTTAAATATTCACTTGAGGCTTTTAATAACAATTTAGCCGGTCATAGAGTCCGTTGGAACACTGACAATCAGAATGTTGTGAGGATTGTTCAGGTCGGTAGTATGATAGAGGAATTGCAGGAATTGGCTCTCGATATTTTTCTGTTCGCTTCCAGTCATAACATTCGTTTGGATCTCGCCTGGATTCCGCGCGATCAGAATTCGGAAGCGGATCGTTTCAGTAAAGTTGTTGATATTGACGATTATTCTGTTCACGATGATGTTTTTATTCATCTCGACCGTCTCTGGGGTCCACATTCTATAGATAGATTTGCGTCTAGTTACAACTCTAAATTGCCTAGATTCAATTCACGTTTTCTTCAATCGGGTACTGAAGCTGTAGATGCATTTTCCCAAGATTGGTCTTGTGAGAACAATTGGATCGTCCCACCAACAACTGTTGTTGGTAAAGTATTAAACCATATGCGCGAGTGCAAAGCAGTTGGAACTTTGATTGTTCCGATGTGGAAGTCTTCTTATTTTTGGTCTTTGCTGTGCAACGATGGCATGCACCTTAATTCGTTCGTTAAGCATTGGTTATGTCTTCCTAAAAGGCCAGATCTGTTTGTCGCGGGTAGAGCAAAGAATAAGCTGTTTGGAACGAAAGCGTTTAAGTCTCCTTGTCTTGCTCTTCGCATTGATTTTCTACAGCCTGAGCGCCTCTCTCCTGTTGGGTTTTATGTTTTCACCAGCGGATTCTGGAAAGACTTGAGTGCTGTTGAAGATGAATCCCTGAAGGAGTTGGCCTCAAGGCTAGAGGCGACTGTTCTTGCCTCCCGTTCTCCAGGAACGACGGATGCTTATAGGAGATCCTTCGCCAGATGGAAAAAGTTTGCAAGTTCTAAATCGGAGTTCCAGCATTTTCCAGCCAAGACAGAGCATGTCGCCTTATACCTGCAGTACCTGATAGACACTTCGCATTCTCAAAGTGCGGTAGACTCTGCTATTTACGCTATTCAGTGGGCGCATACTATGGCAGGCATCCCGTCACCTACTAACAGTCCGATTATACATGCAATAAGGGAAGCTGCCAAAAGATTAGTTGGAACTCGCCCAGTTAACAAGAAAGAGCCCATTTCGGCAGACATGATTAGAAAGCTTGTCAATAATTCAAACTTTGACAATTTACTTGAGTTAAGGAACGTTTGTATTTTTATATTAGCCTATGCGGGCTTTTTCAGAATTCAAGAGGTTCTCCATATCAAGTATGGGGATATTCATTTCAATTCTGGATATGTTGTTATTAATGTTGATGTAAGTAAGACTGATCAATTGAGAAAGGGTAATGAGGTCGTTATTTCTGTAGGCTCGGGTGAGAAAACTTGCCCTGTTAAGATTTTGAGACGATACTTAACTGAAATTGAACGCTATCCTGTTCAATCAGATCATTTTGTTTTTAGAGCATTGTCTAAATGTAAGTCTGGCCACAAGCTTGTTGCGATTAATAGGCCAGTTAGTTATTCCACAATCAGGGAATATTTTAAAGTTAATTTCAAGGACATTGTTCCAGACATTTCATTGTTTAGTACTCATTCGCTGAGAGCTGGTGGTGCTTCAGCAGCGGCCAACGCTGGTGTACATGATCGCCTTTTCCAAAGGCATGGGAGATGGAAGTCTGTTTCTGCGAAGAATGGATATGTTGACGACTCCTTAGGTTCTAGGCTTACAGTTTCCAAAATGTTAGACATTTAG

Transcript

ANN25114-RA

Protein

Uniprot

Uniprot term	Description
Q89703	Putative enzymatic polyprotein OS=Cassava vein mosaic virus OX=38062 GN=ORF 3 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan