Gene detail

Detailed information of ANN25260-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:15412738...15437647
NR annotation: XP_020615335.1, fibroblast growth factor receptor 2-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25260-RA

ATGGGTATTGTTCGGTTTTTTCCTTTTGAAGAAAATAGAAAAGCGTTGGAAAAGAAGTCTTTTGTCGTGGATATTGGCAGCAGTGAGACAGTAAAGTGTTCCCTGAAAAATGAGACGAACCTTATCAAATGGTATGACGACATGGACAAGCAACTCAATTTTTCATCAAATGGGAGGATAAAGGCGACTGGAGTCACACTAGAAATAAAAAATATTCAACTGTCTGATGGAGGGACATATCAGTGCCGAGGAATTACCTATTCCCGTTATTACACGTTCTATGTAAATGCGAGGTTTACTAAGGTTACTAAACAGCAGACCCTTATAAGTGAAAGCTCTGGCATCATACAATGCAGTGCCCAGGGTACACCAGCTCCACAGTTTGATAAATGGAGAAGACAAGATGGAAAGCCACTTCCCAAGGAGAGATTCAGACAACTGTCTAATGGTATTTTGAGTGTCTACCCAGTTCAGCCTGAAGACGAGGGGAGATACATATGTACTATTAAACAGAATAAGGGAAAAGAAAGAATCACGACTAAATATCAAGTGATTGATGTTAATATAATAGTCTTCCCTCAGGTTTCCGTTTCCCCTGAGAACCAAACTGTTCTTGAAGGCAAAACAACCAAGATAAGATGCAATGCCACTGGCGTCCCAAAGCCAACATTTTCTTGGACATTTACGGAGGAAGACCTTCCCGTTGTTGCTAATACGAGCGATGTTCAGAGAGGATCAATCCTTCTCTTAAAAAACGTCACAAAAAAGATGGAAGGACTATACAAATGCACAGCAACAAACACAGTGGGTGCAGCAACCTCAAATGCAACTCTCCGCGTACTAGTTCCACCTAAACTGAACCCTAAGTTGAAGAATCAGTCTATTCCATTGAATTCAACGTTTACAGTGAAATGCATTGTGGGTGGTGATCCTCCGCCAGTCGTCAACTGGACCAAAGATGGAGTGGATCTTGGAATCAACAACAACACAGCTATCATCGATCATGTCTCTTTTGATGATGCAGGCCAATATGGATGCACCGCTAAAAACACGGCTGGGGATGTTAGCGCTACTATCTGGATTCATGTCACAGTCTCTCCACAGATTTCTGTGTATCCAGAAAACCAAACTGTTCTTGAAGGTAAAACGACAAACATAAGTTGCTACGCATCTGGTGTCCCAAAGCCAGCATTGACCTGGAAATTTAAGGATGGAGACCCTCCCTTGGTTGCCAGGGATATTCAAGGGAGATCAGTCCTTCTGTTACAAAACGCTACAAAAAACATGGAAGGGATGTACAAATGCATAGCGATAAACAAAGGGGGTGCAGCAACTTCAAATGCAACTCTTCGTGTGCTAGAAAAACCCACTGCCGAAATTGTTCCGAAGTCATATCCCACAATGGTGTTAGGTGATAAGCTCACGTTGACCTGCAAAGTTAGTGAGTCAACATCGAAGATTGAGTGGAAGAAAAATGATGCACCTGGAATTCCAAGAGCCACGATCAGGGAAGAAGATTATCAAAGCACTCTTGTTATCGAGAAAGTTGACATTCGTGACAGTGGAGATTATTCCTGTGTAGCGCACAACCAAGCAGGCTATGGGTTTTCAACTATCAAAATCAAAGTTAGGGATACCTCGGTCACCGGAACGATGCTGGAGTGGTATTATATTGTTGGTCCCTTGTCGGCTGTTATAATCCTCACACTTTTAAGCTGGCACATCCCTTCTTATCCTAATGGGGAGCAAGCTGGGTACGAGATGGTGACGTTTGACCATGAAGTGGATGAATGGGAGATTTCGCGTGACCGTATAGGACTTCGAGAGGTTATTGGCTCAGGAGCATTTGGTGCAGTCTGGAGAGCAACTTTGACTCAGCTTAATAGAGGAAGGGGGAAACAAATAGTTGCCGCAAAATGCTTTACACCCACCTCTGGGGAGGAAGGAAGGAAAGCACTAATAAGAGAGATCGAGTTGGGGAAACGTCTTGGAGAAACTCCCCAGCCAAACATTATTAAATTTATTGGCTGTGTTACAACACAGATTCACCCAGTTCTGATCATGGAATACTTGCCGTGTGGAGATTTGCTGGGGTATCTGAGAAAAAGTCGAGGAATTAAAGACAAGTACCACCGGGGAGAGGGCGAAGCCATAAAGTTAGAGACCTATGATCTGGTCTCATTTGCCCGACAAATTGCCACTGGAATGGTGTTTCTCGGATCACGAGGGGTTATTCATCGAGATTTGGCAGCGAGAAACATTTTACTCGATCGTAACTTTGTTTGCAAAATTACTGATTTTGGTTTGGCATACCAAAACTTTAAATATGGTCATGGTAACGCCAAAAAGGGCTGTATCCCAGTTAAATGGACCGCACCCGAAATACTATTCGGTAACCCTGCATCCCTCTCAAGTAAAAGTGATGTGTGGTCATACGGAATTGTGCTCTATGAAATATTCACCATTGGGGGAATTCCATATCCTGGTTGGTCCGAGGCCAAAACAATTGCAGAAATCAAAAATGGCTACCGCATGCCGAAACCCCCACATATCGACGACACCCTGTACAATGTAATGTTGAGGTGCTGGCAGTGCAACCCCGACTTTCGCCCACCTTTTGAAAAACTCCGCCAAAGAATGATTTCATATATCGAGGAAAAGGTTTGTTGTAATAGGTTATTCATCATTCATTTATCTTTAGTTTGCCCATATGACATATGA

Transcript

ANN25260-RA

Protein

Uniprot

Uniprot term	Description
P35969	Vascular endothelial growth factor receptor 1 OS=Mus musculus OX=10090 GN=Flt1 PE=1 SV=1
P21802	Fibroblast growth factor receptor 2 OS=Homo sapiens OX=9606 GN=FGFR2 PE=1 SV=1
P17948	Vascular endothelial growth factor receptor 1 OS=Homo sapiens OX=9606 GN=FLT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan