Gene detail

Detailed information of ANN25260-RA in Montipora grisea

Genomic Location: Scaffold_48__1_contigs__length_520221:352928...355780
NR annotation: MCE2449404.1, aminomethyl-transferring glycine dehydrogenase [Candidatus Latescibacteria bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN25260-RA

ATGGGCGACGAATTTGCACCTAGCGATGCTTTTGTCCGCCGGCACATCGGCCCGACGGCCGCAGAGCTAGCGGCCATGCTAGCGGCCGTGGGTGCCGACAGCTTGGACGACCTCATGGCCGAGGCCCTGCCGGCCGCGATTCGGGTGCAAGGCCCCTTGGCGCTGGGCGAAGGCATCAGCGAGTACGAGTTGCTGGGGAGATTGCGCGAATTGGCCGGCCAGAACCGCATCCACCGCAGTTTTATCGGCATGGGCTACTCGGACTGCATAACCCCGCCGGTGATCCAGCGCAACATCTTGGAGAATCCAGGTTGGTACACCCAGTACACGCCCTATCAGTCCGAAATCGCCCAAGGACGGCTAGAGGCCCTGCTCAATTTCCAGACCATGATCGGCGACCTGACGGGTTTTGCCTTGGCCAATGCCTCCTTGTTGGACGAAGCCACGGCCGCGGCCGAAGCCATCGCCATGCTGCGGGCAGTGCAAAAGAAAAACGCGAGCCAGCGCGTCTTTGTCTCGTCGGCCTGCCATCCGCAAACCATTGCGGTGGTCCAAGTGCGGGCCGAATCGCGGGGGTGGGAGGTCGAAGTGGGCGACCACCGAGAATGGGATTTTGCGGCCGGGGCTTTCGCCGCCCTGCTCCAGTACCCGGCCTCGGATGGGGCCCTGTGGGACTACGCCGACTTCTGCGCTCAGGCGCAGGCCCATCAGACGCTCGTATGCGTAGCGGTCGATTTGCTCGCCCTGTGTTTGCTGCGGCCTCCGGGGGAGTTTGGGGCCGCCGCGGCCATCGGGAGCGCGCAGCGCTTTGGCATGCCGATGGGATATGGCGGCCCCCACGCGGCCTTTTTGGCGACGCGACCCGAGTTCCGGCGGCAGGTGCCCGGGCGCATCATTGGCGTCTCCGCAGACGCCCGCGGCCAGCCCGCCCTGCGCATGGCCCTGCAAACCCGCGAACAGCACATCAAAAGAGAACGAGCTACGAGCAATATATGCACGGCCGAGGTTTTGCCGGCCGTGGTGGCGAGCATGTACGCGGTCTATCACGGGCCGGACGGGTTGCGGCGCATAGCCCGCCGCATACACCACCAAGCGCGGGCGCTCGCCCGCGGGCTGGAGGATGCCGGCTACCGAGTCGTCCACGACCAGTACTTCGACGCGCTGCGCGTTGAAGTGGGGGCGCGCGGAGATGCGCTGTTGGCGCGGGCGCGGGCCAAGGGGATGAACTTCCGCGATCTGGGGGACGGGCACTGGGGCCTTGCCCTCGACGAAACGACCCACAAGGCCGATTTGCAGGCCATCCTCGCCTTGGTCGGCGGCGAGTTGCCCGCCAAAGTCGATGGGGAGCCGGCTTGGGCACCCGTGCATGGCCGCCACTCGCGCTTCATGGAGCATCCGGTCTTTGCCGCGCATCACTCCGAGACCGCAATGCTGCGCTACATGCGGCGGCTCGAAGCCAAGGATATGTCCTTGGTCCACGCGATGATTCCCCTCGGCTCGTGTACCATGAAGCTCAATGCGACCGCGGAAATGATGCCGATTACTTGGCCCGAATTCGCGGCGCTGCACCCGTTTGCGCCCGTAGAGCAAGCCCGGGGTTACGCGGCGATTTTCGCCGCAATGGAGGACATGCTGCGCGAAATCACCGGCCTCAAGGGCATTTCGCTGCAACCCAACGCGGGCTCGCAGGGCGAATACGCCGGCCTACTCATCGTGCGCAAATACCACCGGACGCGCGGGGAGCCCCAGCGGAACGTCTGCCTCATTCCGGCCTCGGCCCATGGGACGAACCCGGCCAGCGCGGCCATGGCCGGATTGGACGTGGTCGTCGTGGCCTGTGACGACGAGGGCAATATCGACTTGGCGGACCTGCGGGCGCAGGCCACCGCACACCGCGAGCGGCTGGCGGCCCTGATGGTGACGTACCCATCGACCCACGGGGTGTTTGAAGAGGGCATCGGCGAAATCTGCGCGGTCGTCCACCAAGCGGGCGGTCAGGTCTATATGGACGGTGCCAATATGAATGCCTTGGTGGGGTTGTGCCGGCCCGGGGAACTCGGCGTTGACGTGTGCCATTTGAATTTGCACAAGACCTTCTGCATCCCCCACGGCGGGGGCGGCCCGGGGATGGGCCCCATTGCGGTGGCCGAGCACTTGGTGGAGTTCTTGCCCTCGCACCCCCTCGTCCAGACCGGCGGGGCCGAGTCGATTGGCCCCATCGCGGCTGCTCCGTGGGGCAGTGCGTCGATTCTGCTCATATCTTGGGCCTACTTGCGCCTGATGGGCGGCTCGGGCCTCGCCGAGGCGACGCAGGTGGCGATCCTCAATGCCAATTACCTGAGCAGCCGCCTCGCGGGTTCCTTTCCCGTGCTCTACAAAGGGCGCAACGGCCGCGTGGCCCACGAGTGCATCCTCGACCTGCGCTGGGCGCGGGAGTACGGCATTGGAGTCCAAGACGTGGCCAAGCGATTGATGGACTACGGATTCCACGCCCCGACGGTATCCTTCCCGGTGCCCGGGACCCTGATGGTCGAACCTACCGAGAGCGAGTCCAAGGTCGAATTGGATCGGTTCTGCGCGGCCATGATCGCCATTAGCGGCGAAATTCAGCAAGTAGCCGCCGGGGAAATGGACCGCGCCAACAACCCGCTCGTCCACGCGCCGCACCCCGTGGATGTCGTGCTGGCCGCCGAGTGGGATCGGCCCTATTCTAGGACCGTTGCCGCCCTGCCGGCTCCTTGGCTGTTGGAGCACAAGTTCTGGCCGGCCGTCGGCAGGCTGAACGACGCGCAGGGCGATCGCAACCTGATCTGTTCCTGTCCGCCCATAGAGACGTATTCACAAGAGGAATGA

Transcript

ANN25260-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8DII3	Glycine dehydrogenase (decarboxylating) OS=Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1) OX=197221 GN=gcvP PE=3 SV=1
Q3M9G1	Glycine dehydrogenase (decarboxylating) OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=gcvP PE=3 SV=1
Q8YNF9	Glycine dehydrogenase (decarboxylating) OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=gcvP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21478 all species →	GcvP2_C	Glycine dehydrogenase, C-terminal domain	Domain	Interproscan
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003437 all species →	Family	Glycine dehydrogenase (decarboxylating)	Interproscan
IPR049316 all species →	Domain	Glycine dehydrogenase, C-terminal domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0006544 all species →	Biological Process	glycine metabolic process	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00281	GLDC, gcvP; glycine cleavage system P protein (glycine dehydrogenase)	EC:1.4.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.