Gene detail

Detailed information of ANN25268-RA in Nanomia septata

Genomic Location: chr6:156762011...156777281
NR annotation: XP_047125185.1, leucine-rich repeat serine/threonine-protein kinase 2 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25268-RA

ATGATAAGCATTTTACCATTTCAGATTTTCGATGAGAACCTGGACGAGAATCCGTTCCGGTTGTTACGTCATGAGGTCGCTATCTTGAAACAGCTCAACCATCCATCTATTATCCGATTGGTCGGCGTGTGCGCGCGCCCGCGCATGTTACTGTTGGAGCACGCACCAATGGGAAACCTGGAAATATTGTTGAAGGCAGAGAAGGAGATGGCGAGAGAGCTGCAACACAGGATAATTTTACAGGTACTtgaaatttgggaatcatatctgaatcaaacacaggaaaaatgggacagaaatgatattgaaaaggtacacctctcattcattaaaagtattttaggtgtaaaccgttctacagccaatgttctaatcagagcagaacttggtcggtattcactgaaaggaagatgtcttgttaggaatataaactatactcgttatttgaataagaaatctaacaattctctcgtaaaacaagcattcaattatgaaataaggcaatcagaatctaggaatactattatatcttctattggatacttcaacgacgcaatagaccatataaaaggtcgacatataaatatttttcaattgccgaatcaggaattaaaaggcatgctagatgaatacgccttcaaagaatggaaaatgaactttgatttatcatcaaaatctgacacttatagagagttcaaaaataaaccaaaatttgaaaaatacttagaaagtataactgactttaggcatataaaaacccttacaaagtttagactttccgatcataatcttatgatcgaagaaggaagaagagttcgtcctaagGATCATGTATTCAATAGTCTGAACACCAAAAATGGTAATCAAATTTCTGGCCATGGTCAAATTTATGACACTCTCCTGTTTTGCTTTCAGATAGTAGAAGGTCTTGTGTACCTCCATggcaaaaatattgtttacagAGACCTGAAACCTAGCAACATACTCGTGTTCAGTCTCCATatggaaaaacgggttaatgtgAAACTCTCCGATTATGGCATCTCGCAAATCACAACCCCTCTCGGATTGGTCGCGAATAAAGGAACACTTGGTTACCAGGCCCCTGAGGTGCTGATTGAAAGGAATGAGTACAATACAGAGGTATGGGTTGACATGTTTTCGTTCGGTGCGACGTTATACGAGGTGATGAGTGGAGGTGTGAAACCGTTCGGAAAAATACCGTCCCATTTCGAATTCAACATCGCCGTCCGCTCGCACAAACCCCTACAAAGTCTCACTGCACACGGTCGACCAGCATGGCCGGATGCAGAAATACTTGCTGGACGCTGCTTGTCCGCTGATCCAGATTCCCGCCCAAGCGCCCGTGAAGTTCTCCACGTGTTACAGAAGGTCGATTTCATCACGCTTCAGAACGAGGTCGCCATCTGTAAAGGACAGTCGGTTGAATGTATAGCCATTAGACAACtgcacaacaacaacaactacaacaacaacaacaacaacaacagcagtaGTGAGGAAGTGGAAGTGTGGGTGGGGAGTGGGGCGAGCGGGGCGAGAAGCCAACTCTCCTGGTTTAAAACGGGAGAACAGAAACAGAACATCCAAGGCCTGATGTTAAAAGGCCGTATCCTCTGTATGACGTCATACCTTGATTACGTCATCATCGGAACAAACGAACGAATTATCCACGTGTACGAGGCATGCGCAAAGACACATGCGCATGCGCTGTCAGCGTTGCAAGATTCGATTCTCTGTCTCACCTTGGTGCCACGTGATCGGAAACTCGTTGCGGGATTGGCTAACGGAAAGTTAGCTGTGTATAATGCCGACCAGATAATTAAACAAGattctCCTCCGCAGATGTTCGATTTAAACAAATTGATGGAGATCAGCGACAACCAATCACCAATCACTTGTATCGTGCCCTCGCCACATGACAACTCGATTCTTATTGGCTTCGGGAACCACGTGTGTAAACTCAATCTCTATGGCAACAAAAATACGCTCGTCAAATATTGGAAAGCTTCCACGAAACCATCTTGTTTTGTCTACTCTATTGTCCTTTCGACCAATCAAAGCTTGACATTGACAAGTTgtaaaaatgatgacgtcattagCGTATGGGACTCGACAAATGATGTCATACAGCATCAAATCAAATGTCGACAGATTTTGACCAAATATGGTTATAACGTCTCGCACATCGACAGTCGAGTTCTTTCGATGAAAATTGTCAACGAAAATGCATTATGGGTAGGATGTGGAGGTGGTCACGTGATCGTGCTTGATATTCTCCATCATGATAATGAAGAAGGAGTTGTATTGTGGAGATACACGTCCGCTGTGCGAGTTATAACTGTGGCGAGTGGTTCGAGTGTAGTTACCGGAGGGTTGGGATTCAGACAACTCGATCATACGAGTTACTCGAGCGATAATAACCATGACAATAATGATGAATTTGGTTGCGTACAGGTATGGTCTGCAGAACTGCTAAAGGATAAAATACGATTGGATGAAATGAAGAAAAAGCGAGAGGAATTAGCCAAAGAAATGAGAATTGATGAAATAGAGTATTCGCCCATGTAG

Transcript

ANN25268-RA

ATGATAAGCATTTTACCATTTCAGATTTTCGATGAGAACCTGGACGAGAATCCGTTCCGGTTGTTACGTCATGAGGTCGCTATCTTGAAACAGCTCAACCATCCATCTATTATCCGATTGGTCGGCGTGTGCGCGCGCCCGCGCATGTTACTGTTGGAGCACGCACCAATGGGAAACCTGGAAATATTGTTGAAGGCAGAGAAGGAGATGGCGAGAGAGCTGCAACACAGGATAATTTTACAGGTACTTGAAATTTGGGAATCATATCTGAATCAAACACAGGAAAAATGGGACAGAAATGATATTGAAAAGGTACACCTCTCATTCATTAAAAGTATTTTAGGTGTAAACCGTTCTACAGCCAATGTTCTAATCAGAGCAGAACTTGGTCGGTATTCACTGAAAGGAAGATGTCTTGTTAGGAATATAAACTATACTCGTTATTTGAATAAGAAATCTAACAATTCTCTCGTAAAACAAGCATTCAATTATGAAATAAGGCAATCAGAATCTAGGAATACTATTATATCTTCTATTGGATACTTCAACGACGCAATAGACCATATAAAAGGTCGACATATAAATATTTTTCAATTGCCGAATCAGGAATTAAAAGGCATGCTAGATGAATACGCCTTCAAAGAATGGAAAATGAACTTTGATTTATCATCAAAATCTGACACTTATAGAGAGTTCAAAAATAAACCAAAATTTGAAAAATACTTAGAAAGTATAACTGACTTTAGGCATATAAAAACCCTTACAAAGTTTAGACTTTCCGATCATAATCTTATGATCGAAGAAGGAAGAAGAGTTCGTCCTAAGGATCATGTATTCAATAGTCTGAACACCAAAAATGGTAATCAAATTTCTGGCCATGGTCAAATTTATGACACTCTCCTGTTTTGCTTTCAGATAGTAGAAGGTCTTGTGTACCTCCATGGCAAAAATATTGTTTACAGAGACCTGAAACCTAGCAACATACTCGTGTTCAGTCTCCATATGGAAAAACGGGTTAATGTGAAACTCTCCGATTATGGCATCTCGCAAATCACAACCCCTCTCGGATTGGTCGCGAATAAAGGAACACTTGGTTACCAGGCCCCTGAGGTGCTGATTGAAAGGAATGAGTACAATACAGAGGTATGGGTTGACATGTTTTCGTTCGGTGCGACGTTATACGAGGTGATGAGTGGAGGTGTGAAACCGTTCGGAAAAATACCGTCCCATTTCGAATTCAACATCGCCGTCCGCTCGCACAAACCCCTACAAAGTCTCACTGCACACGGTCGACCAGCATGGCCGGATGCAGAAATACTTGCTGGACGCTGCTTGTCCGCTGATCCAGATTCCCGCCCAAGCGCCCGTGAAGTTCTCCACGTGTTACAGAAGGTCGATTTCATCACGCTTCAGAACGAGGTCGCCATCTGTAAAGGACAGTCGGTTGAATGTATAGCCATTAGACAACTGCACAACAACAACAACTACAACAACAACAACAACAACAACAGCAGTAGTGAGGAAGTGGAAGTGTGGGTGGGGAGTGGGGCGAGCGGGGCGAGAAGCCAACTCTCCTGGTTTAAAACGGGAGAACAGAAACAGAACATCCAAGGCCTGATGTTAAAAGGCCGTATCCTCTGTATGACGTCATACCTTGATTACGTCATCATCGGAACAAACGAACGAATTATCCACGTGTACGAGGCATGCGCAAAGACACATGCGCATGCGCTGTCAGCGTTGCAAGATTCGATTCTCTGTCTCACCTTGGTGCCACGTGATCGGAAACTCGTTGCGGGATTGGCTAACGGAAAGTTAGCTGTGTATAATGCCGACCAGATAATTAAACAAGATTCTCCTCCGCAGATGTTCGATTTAAACAAATTGATGGAGATCAGCGACAACCAATCACCAATCACTTGTATCGTGCCCTCGCCACATGACAACTCGATTCTTATTGGCTTCGGGAACCACGTGTGTAAACTCAATCTCTATGGCAACAAAAATACGCTCGTCAAATATTGGAAAGCTTCCACGAAACCATCTTGTTTTGTCTACTCTATTGTCCTTTCGACCAATCAAAGCTTGACATTGACAAGTTGTAAAAATGATGACGTCATTAGCGTATGGGACTCGACAAATGATGTCATACAGCATCAAATCAAATGTCGACAGATTTTGACCAAATATGGTTATAACGTCTCGCACATCGACAGTCGAGTTCTTTCGATGAAAATTGTCAACGAAAATGCATTATGGGTAGGATGTGGAGGTGGTCACGTGATCGTGCTTGATATTCTCCATCATGATAATGAAGAAGGAGTTGTATTGTGGAGATACACGTCCGCTGTGCGAGTTATAACTGTGGCGAGTGGTTCGAGTGTAGTTACCGGAGGGTTGGGATTCAGACAACTCGATCATACGAGTTACTCGAGCGATAATAACCATGACAATAATGATGAATTTGGTTGCGTACAGGTATGGTCTGCAGAACTGCTAAAGGATAAAATACGATTGGATGAAATGAAGAAAAAGCGAGAGGAATTAGCCAAAGAAATGAGAATTGATGAAATAGAGTATTCGCCCATGTAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q5S006	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus OX=10090 GN=Lrrk2 PE=1 SV=2
Q5S007	Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens OX=9606 GN=LRRK2 PE=1 SV=2
Q8WMV0	Rhodopsin kinase GRK7 OS=Bos taurus OX=9913 GN=GRK7 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050167	Family	Serine/threonine-protein kinase	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17302	COPB2, SEC27; coatomer subunit beta'	-	Exosome	ko04147	deepkoala