Gene detail

Detailed information of ANN25400-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:18137798...18152954
NR annotation: CAH3019233.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25400-RA

ATGGCGTCGAACGAAGATTGGCGTTCTACTGCATTCCGACAAAAAGTTCTTTCTCAAATTGAGGAAGCAGTGAAGAGATCAGGGAATCCAAATGTGATGATGAAAAACCCGAGTGAAATGGAGAGTCAAGTGTACTCCAAGGCCAAAACAAAGAATGAGTACCTTTCATATGTTGCTCGTCTTTTGGTTTATATTCGAGACATAATTGGCAACACTCTTCATCACAGTGCCCACAAACCATGTGATGTCGGCTTTGGGTGGCCCCATGTCTTTTTTTTATGCTCCAGGCTTCATCAGAGAGGCACCATGGTTATGGCTAAACTACGGTCAAATGCAAAAAATAAGAAAAGGCCTCAGGGACAGCAACAGCCACAAGCCCCTAACATGGCTCCTCAGCCTGGCATGAGACCACAATTCCCAACTCCTCAGATTAATAAACAACCAATATGCGGAGTGGGAGTACAGGGTACCACCCAGCAATCACCAATGCAACAGGTTCAACAGGCTATTCAAAGGCCTGGCAGCATGCCTCAGGCACAACTGCCAACACAACAGGTGTTTTATGACAAGTCAGGGCTGACACAGCAGCAGATTCTTAATCTGCACCTACAGCAGCAGCCCCAGCAACCAGTGCCACAACAACCTCTAGGAGTCACACCGCAGAGTCAAACAGGGCATCACCAGATGATGCCCTCACAGGCCCATGTCAGTGTCCCCCCCAGTCAGGTGGGCTCTCCGATGCCTGTCCAACAGCAACCAGTCCTTCCAGCACAACAAACCAAGCATGCGGTTCAAGTGAGAATGCCGCATGTTCCATCTCCTGCACCAATGATGACTTCCACTTCCATGCGAGCACCAACTCCCTCCTCTGCCCAGCATTCCTCTCACACAAGCCAGGTCACTGTTGCCCCGTCACCTGCTCCATTCGTCCCATCTCCTGCCACTCATCCTTCACCCTCCCCTCAGTATGTTGTGGCGGCATCACCAGCTACCTCTACGTCAGTCCCTACTCCCAGCACAATGAATGTTCAGTCACCAGCTTCCGTTCTGAACCCAGGCTCTGTTGGTGCCCCAGCAGCCAGCCCAGCCTCACTTAACCCTGCTGAGGAACAGGCGTATTTGGACAAGCTGCAAGAACTGCAACCTTATGTTGAACCGCTGAGTAGGATGATCGCCAAGATGAACAGAGAAATGAGAGATAAAGAACACAGCAGCAGGGATCTTCACAAGCTAAAACATCTACATGACATCCTAACAAACCAGTCAAAAAGGGTTTCTTTGCAAGCACTTGAAAGTAGTGGCAATGTGCTTAAAAAGATTATCATGATACCGCACTCAGTCCCCACCCCTCCAGCACCTCCAACACCATCAGGTACATGTAACACATCCTCCAATATGGCCACAACCTCAGGCATAATGACGTTAACCACAACGTCAGCGACAGGACAACAAGCTGTGGTGCCTACCCTTCCACAGGCAATCTGCAAACCATTGTATGATGCTGTTGCAAGACATGCCAAATCTCCTATGTTGAGCCATACTCTGAAAAGGACATTCTCTCCTCTCCTGCAAGCCATGGAAGGTCCTGCTATATTCCCATTACCTCCACCTGCTAAAAGGATCAAAATGGCTGACAGCAGAGAAAAGAAATGCACTGTACCACATGTCTTGCAAGGGGAGCTTGCTAGACTCTGCAGCCGATTTCAAGTGAAGTCAGGGAGGAGCACGGGAGTGGTACATAGCAATACACTGCTTCAGTGTTCAATAAATGACCTCAATTTGCCAGCTGTTCCACCAATAGAGATCAGTGTTCCACACAACTATCCTTTCTCTAGTCCCGAGTGCAAGACTGCTAATTACAACGCCAACCCATTTCTTCAGAAAGTTCAGCGACAGCTTTCCTCCAGACTTCAACGCATGCCTGAGATGTACTCAGTTACTTCAGTGCTAGATGCCTGGGTAGTAAAATCTAAGCTAATTCAGGCCAAATTAAGTCCTAGCTGGGTCTTGTTTCGCGTAACGTCCGCTACAGTTATTGACAGCAGTGGAAAACGTAACCCGGAATCAAGCATACGGCAGGCTTGCATACCAGAGGTTGCAGTAAAGTAG

Transcript

ANN25400-RA

Protein

Uniprot

Uniprot term	Description
Q924H2	Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q96RN5	Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21539	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan
PF21538	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan
PF09606	Med15	ARC105/Med15 mediator subunit N-terminal KIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048386	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan
IPR036529	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR048385	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan
IPR019087	Domain	Mediator of RNA polymerase II transcription subunit 15, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15157	MED15; mediator of RNA polymerase II transcription subunit 15	-	Transcription machinery	ko03021	deepkoala