Gene detail

Detailed information of ANN25417-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:18439625...18454993
NR annotation: XP_020601843.1, uncharacterized protein LOC110040923 [Orbicella faveolata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN25417-RA

ATGACGACAGTAAAATGTGGTACCTCTTTCTGTCTTTCCGCGAGCTTGCCGCCATGTTGGATTGGAACTTCCCGCCACAGTGTCACATTTCTATACTCCGTTCCAGTCCTCAACCCGGTTTCGAACTGTTGCTCCGCTGTCAGTCATCCTGTCACGTTCGGGAATGAGGTAAACATGGCGAACACTGGTGTTAGTAATTATTGTAAAAATAGCGGCAGCTGTTTTAGGGCTGAAATTATCTTGAAGAGGAAGAATGATGATAGCATACTACTTTGGAGATGCGACAGTGAAAGCCAGTGGGAATTGCCGTGTTTTTTTCTGAAAGAAAGTGAAAGTTTTCAGCAAGGAATCGAGAGATGGTGTTCCAACCAGCTACAGGTAAGCTTGATGATAGTTTTCTTCAGGAGACTGCACTTAGTAATCAAAGATCATGGGAGCACATTTGATGACTCATTGACACAAATGCAAGGTACTGGCGAGAATATGGAATTCAATCTCCATGGTGTAGCTGGTATCAAGCATCACATCAACAATAAAGGAAGAATTATAATATTGACATTTTTTGTATCTTGTTCTAATTACCAGAACATCGCTCAACAGACAGAAAAACAATTTAATAACAGTTGTGAGCATAGTGACCCAAAAAGCACTGTAGGAAGTACAAATGACTCACGTTTTAAGTGGTTTTTAGTTTCCGATGTGGAATCATTTAGGGAGACCGTAAAAGGAGATGTTTGTAACTGGATCAAAAAGGCATTAAAGGAAGGATTGGTAGCTTTAGATGTTTTTGAGGAATTTACCAACTCCTCTGGCACACATGTGCAGGAAGAATCACCATCAAAAGGAGCTTGTGAAAATAGTACTACAACTGACAGTCTATTGTCTCAAAGCACAAGTGACTCAAGTGGCTCAGCAAGTATAGACAGTCATGTGCAACAACATCAAAAACTATGCAAAGTGTCAACTGGAGTTAATATTCAAAATTCAGAGATTTTAACAAGGAAGGATGATAAGAATTCTCTCGGACCAGCTAAGACAGAGAAACCCAGTCTTGTCTCTGCTATGGAAAAACTTGTGGAGTCAGCACATTTTGGAAAGCTAGAGAAAGAATTTATCAAAGAGAAGTTTCAAAAGTGCAGTGGTGGAGTTAAGGCTCTAGATGTTGAAAGATTTTCCCTAATTATGGAAGAGCTTGGGGTAAAAACCAACAGAATCAAAGACTTGTTCAGGTCATTTGACTTAAACCATCACAATCAACTAACATATGAGGAGGTACTCTCTGGAGTAGCAGCTATGGACCCATCCACACCCCATGGGGGACCCTCTGGGGAGATGCGTTGTCGTTATATCTTCAAGTTCTATGCTGCTGAACAAGAAGCTGTTCTTTCCTTTGAGGAATTTAAGTCAATGATCAGGGATATACAGCAACTCAAGGGAGAGAATACAGAGGATGCTGTTGTGTTAGAGGAGGCAATGAGCAAGGCCAAGCTTTTCGGGACAGGCCACAGTGACAAGCTAGAATTGGTGGACTTTTTGGAAGCAGTGGGTACCCTGAGGTTCCGTGGGACGTCTGTGCTGTTCCGCCTGCCTGTGTCAATTATTAAGCTCGCTCAAGATGAAATGTATGAAAGTCTGACCGCCGGAGATCACAAATCTAGCGCTCAGTCTCCATTGAAGAAACGGAGGAGTAATGACACAGAAGACGCCATGAAGTTTCAAAGAGATGGCTTTTCAGTTGAAGCTGTCTCGGATCGGTACGTACTGGCCACCCACACAGTGAAAGTACGGCGGAGTGGAATGTTGAGTGACGTCAGTGCCTTATGGGATACCAGTAACAGCACCATGGTAACGGGGTCCGCTCAGAGTCAACTGTCTTCTGCTAAGTTAAAAATTGAGCGCCTACCATCCATCAACTGCTTTAACCAGGCATGTATACAATCAGATGCCAATCAAATGTTGTCGGCCCTGAGGTACTTTGAGCGTGCAATCAAAGTTGCTGGTAGTAGAACCGGGGGTCCTAAAGACAGCTTCACCTGGGGCTGTGTTGAGATGTCGTCGCTAGGGAACTGTCTGGTGTGTATCTGTCGGAGCCTTCTGGAGATCATTAAAAAGGAACCTCGGCTTGTTAGAGTCAAGTCACCCACCTATGTTGTAGGCGACCTCCATGGTAATTTCCATGACTTGGTGTGTTTTGAGAAGGTTCTATGGCGCATGGGTCCAGTTCTCACACCTGCTAGTTTCATGTTCCTGGGGGACTATGTCGACCGCGGGGAGAATGGAATCGAGGTTGTTGCGTACTTGTTTGCGCAGAAGTTACTGGCGCCGTCCAAGTTTTTCCTGATTCGTGGTAACCACGAGATTAGAAGCATTCAGAAAATGTTCACGTTTCATAGTGAATGTGTACAAAAGTTTGGTGCTGTCCTAGGCGAGGAGGTCTGGAATGTAGTTAACGCCATATTCGATGTTCTCCCATTAGCTGCTGTTGTGGATAATAAGATCTTTTGCGTTCATGGCGGTATTCCGCTGTCCAGTCAAGGAGGTGGGCTCGTCTCTTCGATTGACAACATTCCCACTGTTCTGTCCGAGCCAGAGAAACAAAGTGAACTGGCCTGGGAACTGATGTGGGGCGACCCCCTAAGGTAA

Transcript

ANN25417-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JRC7	Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio OX=7955 GN=ppp4cb PE=2 SV=1
A6H772	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Bos taurus OX=9913 GN=PPP4C PE=1 SV=1
P60510	Serine/threonine-protein phosphatase 4 catalytic subunit OS=Homo sapiens OX=9606 GN=PPP4C PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005068 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR006186 all species →	Domain	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR050341 all species →	Family	Serine/threonine-protein phosphatase PP1 catalytic subunit	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11668 all species →	SERINE/THREONINE PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0004722 all species →	Molecular Function	protein serine/threonine phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN25417-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.