Gene detail

Detailed information of ANN25417-RA in Montipora grisea

Genomic Location: Scaffold_914__1_contigs__length_67851:32370...37295
NR annotation: QIA61847.1, solute carrier family 40 member 1 [Halichondria panicea]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN25417-RA

ATGCACATTGGGGTATCCTGTAGACCATTGTCTGAACTGGTCATAGAAGAAGGCATTTACCTTCAGAGGGTGAAAGAGGATGAGAAGTCACGGATGCTGTATTTTGGCAACTACACATGGTATGCAAGTGATCCAACTACAAGACTAGAAGAGATGTACAGTCCAGGGACATGTGCCTCCAGTTTTCGTCTGAGAACGTCTTTACCGCGTGGCAGGATGAAGGGAGACAGCGACCCTAAAGGGGAAGGAGTAGGGGAGACACCGGAAGCCGAGGCAGTATCTACAAACAGGAATAGAAAACAAACGCTCAGAGATGTGGTGTTCCCACGACTGACCCTGCACAAAGGTCAGGAGGCTCTCTCCTATCGGAGATCAGCTCTCGTTCTTTCCCTACTCTATACCAGTCACATCTTCTCTGCATGGGGTGACCGTATGTGGCAGTTTGGTCTGCTGCTGTTCCTAGTCCTCCTCTACCCGGGCTCTCTGCTGGTCCCTGGGATAGGTGGACTAGTCCTGACATTATCAGTGGCCATGTTTGGAACCATTGTTGGTGACTGGGTCGACCACAATCCCAGGATGAAAGGTACTGCCCTAGTCATGGTTGGGAAAAGAGAGTGGGTCTCTGTACCACACCAGGATCAATTGTCTGCTTACATTGACTATATCAAGTGTAAAACCAGTCCGGGTGTTTGCAGGGAGAGAGTAGAGCTCCTAACAGAGCTTTTGGGAGGATATTCAAGAATTGTGAAACCCTCCCACTGGCACAACCCTCCATCGACTACCTACTTCCTCCTCTTGCTTCCTGTAGTGATTTGGGTGAGTCTGCTGCTCCAGAACGGGCTTGTGGTGGTGACCTCCATCATCCTGGCTCTGATGTTTCACTTTGAGTGGAACGTGTGTCTCCACGTTGTCGTCTTCTCCTGTCTCACTGTGCTGGTCATCCTCTTCGGTGCTACTGCTAACTTGGCCACGGTGGCTAACACCATCTCTGTGGAGAGGGACTGGGTTGTGGTGATCGGTGATAGCAATGAGAATACCCTTGCAGTCCTGAATGCCAACATGCGTCGTATCGACCTCTGCTGCAAGATACTCGCTCCGATTGCCACTGGGGTTTTCCTTGAACACACCGGACCTTTCATCACCGCCATAGTCCTGGGTAGCTGGAACATCGTATCCTTCTTTGCAGAGCTTGGTTTAATCTGGCTGGTGTACCGGATGATCCCTACCCTATCCATAAAGAAGTACCGGAAACCCAGCACAGTCTCCATGCTGGAGTTCCTTGCTGATGAAGAGGACAAAGAAGCGGAAGAGAAAGAAGAAGACGACACTTTTCAAGAGAGTGTCGAGAACGACCTCCAGTCACAAAAGACACGATTCAGTACAAAGATTCTCCATTTTTGCAGCAAGTTCCTGACTCCATACCATACCCTCAAGGAGGGTTGGGGGATTTACATGAAGCAGAGCATAGCCAGGGTCGGCTTTGCCCTTGCTGCACTTTACCTGACAGTCCTAGGGTTCAGTGGTGTGACCTCTGCATACCTGCTGACCCAGGGACTTCGACAGGATCTGATAGGCCTGTTTATGGGTGTGGGAGCAGTGTTTGGAGTGACTGGGACTCTCACGTTCCCGTTCATACGGAAGCGTCTGGGAACCACTAGGACGGGACTGTTTGGTCTGTGTGCACAGGTGTCCATGTTGATGTTCTGTGCTCTGTCTGTAGTGGTCCCTGCCAATCGGGTGAGCAGTAATGGAGAACATTACTACTCAGCGGACTGCAGTGCATATGGGAGCAGTGATGACAGACCTCTTGTCCAACCAAACACCACCTATTCGTGCGTTCTGCCCAGTGCTCTTCCGTCACTGACCACCATTGTAACTACATCAACTCATTCATCGGCAGTGGTTAGTGTGTTGGAAAGCTCAAGCATGGTCAGCTCTACTATATACGCTCAGAGCACTGTGTTCAACAACTCGTCTTTAACACTCCGCACCACCACAGCTGCTATTGGTAGTACTAGTTTGTTGATCACACCATCATCAACATTATCAAAAAATCAGGTTACATCATCTCCTAGCCTCGGCCAGTCTTTGTCCTATTCAACATTTCTTGATAAACTGCCATCCCCATCACCTCACGTCACACCATCTAGTGTACCACCTGCTTTTTTCAAACGAGCTGCCCATGCCAGCCGTTCTATACCCCCTCACTGCTCACCAGTTCATACACCCCACCCTGGAAAGAAAAATGGTACTGATGACACATCTGGAAGTGGGGGTGGTGTTAGCTTGGCTCTGGTCTTTCTGCTATTTGGTATGCTTGCTGCACGATTTGGCCTCTGGATCTTTGATCTCAGTGTGACACAGCTAGTCCAGGAGAAAGTGATTGAGGAAGAGAGGGGTGTTGTCGGTGGGGTGATGAATGCTATGAATTCCATCATGGACATGTTGCACTATGTCCTGGTCATTGCGGCACCGAGGCCGGAACACTTTGGCATCCTCGTATTCATATCTGTTGCCATGGTTACATCAGGACTCCTAATCTATTCCTCGTATGTCCATAAAGTGCGAGGCCATCTCTTTCACTTTGTGGACTGTTTTCGCTGGTTGAAGAAGAAAACCATGGCTAACGGGTTTGCGCCAGTGAGTCAGTCAGTATCTGAAGGAAGGGCTGAAGAAAAGGAGGCAGCAACGTCACTCCTTAACCCACCAGGAGTTCAGCTGGCAGGAGAGGAGGAAGATGAGGAGGGAGGGGGAAACACTGATACTGTGTGA

Transcript

ANN25417-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I9R3	Solute carrier family 40 member 1 OS=Danio rerio OX=7955 GN=slc40a1 PE=1 SV=3
Q5Z922	Solute carrier family 40 member 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0560000 PE=2 SV=1
F4KGN5	Solute carrier family 40 member 2 OS=Arabidopsis thaliana OX=3702 GN=IREG2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005248 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06963 all species →	FPN1	Ferroportin1 (FPN1)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009716 all species →	Family	Ferroportin-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11660 all species →	SOLUTE CARRIER FAMILY 40 MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005381 all species →	Molecular Function	iron ion transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034755 all species →	Biological Process	iron ion transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14685	SLC40A1, FPN1; solute carrier family 40 (iron-regulated transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.