Gene detail

Detailed information of ANN25502-RA in Montipora grisea

Genomic Location: Scaffold_78__1_contigs__length_336227:292984...294309
NR annotation: RKU24849.1, transcription termination factor Rho [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
O67031	Transcription termination factor Rho OS=Aquifex aeolicus (strain VF5) OX=224324 GN=rho PE=3 SV=1
P0A296	Transcription termination factor Rho OS=Salmonella typhi OX=90370 GN=rho PE=3 SV=1
P0A295	Transcription termination factor Rho OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rho PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF07497	Rho_RNA_bind	Rho termination factor, RNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000194	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041703	Domain	Transcription termination factor Rho, ATP binding domain	Interproscan
IPR004665	Family	Transcription termination factor Rho	Interproscan
IPR011113	Domain	Rho termination factor, RNA-binding domain	Interproscan
IPR011129	Domain	Cold shock domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036269	Homologous_superfamily	Rho termination factor, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46425	TRANSCRIPTION TERMINATION FACTOR RHO	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006353	Biological Process	DNA-templated transcription termination	Interproscan
GO:0008186	Molecular Function	ATP-dependent activity, acting on RNA	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03628	rho; transcription termination factor Rho	-	Messenger RNA biogenesis	ko03019	deepkoala