Genomic Location: Scaffold_2__1_contigs__length_39127999:22261098...22274071
NR annotation: XP_029191414.2, 4-hydroxyphenylpyruvate dioxygenase-like [Acropora millepora]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN25564-RA |
| Transcript |
| ANN25564-RA |
| Protein |
| ANN25564-RA |
| UniProt accession | Description |
|---|---|
| Q5BKL0 | 4-hydroxyphenylpyruvate dioxygenase OS=Xenopus tropicalis OX=8364 GN=hpd PE=2 SV=1 |
| Q6TGZ5 | 4-hydroxyphenylpyruvate dioxygenase OS=Danio rerio OX=7955 GN=hpd PE=2 SV=1 |
| Q5EA20 | 4-hydroxyphenylpyruvate dioxygenase OS=Bos taurus OX=9913 GN=HPD PE=2 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004457 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00903 all species → | Glyoxalase | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037523 all species → | Domain | Vicinal oxygen chelate (VOC) domain | Interproscan |
| IPR029068 all species → | Homologous_superfamily | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | Interproscan |
| IPR005956 all species → | Family | 4-hydroxyphenylpyruvate dioxygenase | Interproscan |
| IPR041736 all species → | Domain | 4-hydroxyphenylpyruvate dioxygenase, N-terminal | Interproscan |
| IPR004360 all species → | Domain | Glyoxalase/fosfomycin resistance/dioxygenase domain | Interproscan |
| IPR041735 all species → | Domain | 4-hydroxyphenylpyruvate dioxygenase, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11959 all species → | 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003868 all species → | Molecular Function | 4-hydroxyphenylpyruvate dioxygenase activity | Interproscan |
| GO:0009072 all species → | Biological Process | aromatic amino acid metabolic process | Interproscan |
| GO:0016701 all species → | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | Interproscan |
| GO:0000139 all species → | Cellular Component | Golgi membrane | Interproscan |
| GO:0005789 all species → | Cellular Component | endoplasmic reticulum membrane | Interproscan |
| GO:0006572 all species → | Biological Process | tyrosine catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00457 | HPD, hppD; 4-hydroxyphenylpyruvate dioxygenase | EC:1.13.11.27 | Exosome | ko04147 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
