Gene detail

Detailed information of ANN25635-RA in Montipora grisea

Genomic Location: Scaffold_906__1_contigs__length_68442:22954...23831
NR annotation: WP_167182450.1, tRNA pseudouridine(55) synthase TruB [Aestuariicella hydrocarbonica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q21H63	tRNA pseudouridine synthase B OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=truB PE=3 SV=1
Q02FT0	tRNA pseudouridine synthase B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=truB PE=3 SV=1
A6VCJ9	tRNA pseudouridine synthase B OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=truB PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	Family	Interproscan
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan
PF09157	TruB-C_2	Pseudouridine synthase II TruB, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036974	Homologous_superfamily	PUA domain superfamily	Interproscan
IPR002501	Domain	Pseudouridine synthase II, N-terminal	Interproscan
IPR014780	Family	tRNA pseudouridine synthase II, TruB	Interproscan
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR015240	Domain	tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13767	TRNA-PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03177	truB, PUS4, TRUB1; tRNA pseudouridine55 synthase	EC:5.4.99.25	Transfer RNA biogenesis	ko03016	deepkoala