Gene detail

Detailed information of ANN25737-RA in Montipora grisea

Genomic Location: Scaffold_100__1_contigs__length_260536:118459...120117
NR annotation: WP_075446971.1, CRISPR-associated ring nuclease Csm6 [Candidatus Kryptonium thompsoni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
P14375	Transcriptional regulatory protein ZraR OS=Escherichia coli (strain K12) OX=83333 GN=zraR PE=1 SV=2
Q8X613	Transcriptional regulatory protein ZraR OS=Escherichia coli O157:H7 OX=83334 GN=zraR PE=3 SV=1
P25852	Transcriptional regulatory protein ZraR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=zraR PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09623	Cas_NE0113	CRISPR-associated protein NE0113 (Cas_NE0113)	Family	Interproscan
PF02954	HTH_8	Bacterial regulatory protein, Fis family	Domain	Interproscan
PF00158	Sigma54_activat	Sigma-54 interaction domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019092	Family	CRISPR-assoc protein, NE0113/Csx13	Interproscan
IPR002197	Domain	DNA binding HTH domain, Fis-type	Interproscan
IPR025943	Binding_site	Sigma-54 interaction domain, ATP-binding site 2	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013413	Family	CRISPR-associated protein, NE0113	Interproscan
IPR002078	Domain	RNA polymerase sigma factor 54 interaction domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32071	TRANSCRIPTIONAL REGULATORY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan