Detailed information of ANN25778-RA in Montipora grisea

Genomic Location: Scaffold_84__1_contigs__length_319532:207303...208322
NR annotation: MBY8976677.1, tryptophan--tRNA ligase [Coraliihabitans acroporae]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q98C31Tryptophan--tRNA ligase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=trpS PE=3 SV=1
Q92SI9Tryptophan--tRNA ligase OS=Rhizobium meliloti (strain 1021) OX=266834 GN=trpS PE=3 SV=1
Q8UIE8Tryptophan--tRNA ligase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=trpS PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004173 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00579
all species →		tRNA-synt_1btRNA synthetases class I (W and Y)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002306
all species →		FamilyTryptophan-tRNA ligaseInterproscan
IPR024109
all species →		FamilyTryptophan-tRNA ligase, bacterial-typeInterproscan
IPR002305
all species →		FamilyAminoacyl-tRNA synthetase, class IcInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR001412
all species →		Conserved_siteAminoacyl-tRNA synthetase, class I, conserved siteInterproscan
IPR050203
all species →		FamilyTryptophan--tRNA ligaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43766
all species →		TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIALInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004830
all species →		Molecular Functiontryptophan-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006436
all species →		Biological Processtryptophanyl-tRNA aminoacylationInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01867WARS, trpS; tryptophanyl-tRNA synthetaseEC:6.1.1.2
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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