Gene detail

Detailed information of ANN25786-RA in Montipora grisea

Genomic Location: Scaffold_4289__1_contigs__length_32795:2306...15153
NR annotation: XP_019853380.1, PREDICTED: clustered mitochondria protein homolog [Amphimedon queenslandica]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN25786-RA

ATGGATCCGTGTGATTGCTGCTATGTCTGGGCAATGAGGAGACTTCTTCAGGCGATACAAGGACAGACTCAGTGTAGCGATTCAGAATGCTTCAGTGAGCACCCTGGTTTTGAGAGCTCGGATACCCAGCTATTTCAAGTGGTACTCTTTGTCCTCCTCTGGGTAATCATTGCTGTTGTCCTCTTCCTGTACAGACCAATGAGTCTCAGACGAACAGGTGGAAAGCCTTCGCATGATAATGCATTTGACTCCAGAGCTGAGATGCCCGGCATACTAACGGACAAACCCCCTGAAGTAGAGGGCAAGGCTCCACCACTGGTACCATCCAGTGATGGTGAGAGAGAAGAGTCTGATGAAATACAGATAAAGGAAGACAGCACATGTACGGTTGAGTTAGTGGGAGGACAAGGTGATGGAGGAGGCGGGAAGGAACCAGCAGTGAGATGTCCATTCCACCGGCACTCCAGCAGCCCTGAATCAGGTGCTAAACTAACGACTGTAATAGTGCTAGAGCATTTGGGTTGTCTTACCTCTTGTCATTGCTATGGTGACGAGGAGTATTATCAGGAAGTGGAGCTGAACCATTCCTCCAGTACCGGTACCACTAGTGAGGGAGAGAGCGCAGACTCGAAGGAGAGTGGCAGTGACACCATTAGTCCTGATGATCAACAGGGACCTCCCCATCCTACCACCACTAACGAGGGAGGAAAGGAAGAAGAGAAATCTGAAGAAGGAGAGACCAACAGGGACAGGGAACGGGAGGAGAAAGGAGAGGGGGCTACGGAGAGCAGTGAATTTGCGATGCTAAACTTGAGACTGGTTTTGCCTGGTGTACAACAGCCATTGAACGCCTTGGTGTCCACAAAGGACTCAGTGCATGATCTGCTCCAGTTTGCGTTGGAACGTCCTGAGTGTTGCTATCGTACATCTCTCTCAGTCAGGATGAGGGGGAAGAAACTGGATGAGTATTCTGAACTGGGACAAGTGGAGGATTTGGAAGATGGCACCTCCTTGGAGCTAGTAGAAGAGCCATACACCCAGAGAGATATTAGAGTGCATGTACAACGTCTGAGGGACCTCCTTTCCACGAACCCTGCCCAGCAGGCTGTGAGCAATGCAGACGGACTCTCTCTGTCCTTCCTTGCTGCCATCACACTCAAGGACCCTGAAGGAGATCTACTCTATATTGATGTGACGACCCTGGAAGGACAAGATTATTACATAACTGCTTGTCCTTCGGGATTCTACCTGAACAAGAGCACGAGCCGAGATCAGTTTGACCCTACCCCCAGAAAGGTCTCACACCTCTCCAAACACCTCGTCGGACTGCTCTGTCAGGTGAGTCCGCTGTTCAAGAAGAACTTTGCTCAGCTGCAGAAGTTTGGTGAGAAGCGGCACGCCTACGAGGTACTTCCTGTGCCCTATCCTGTCATTCCTTGGGTAGCTCCAAAGCCCGAACACAGGCCGATCAACTTCAGGATTGATGATGGTATGATGGTGAAAGGTGCACCTGACGAATTGGTTCTGGGGCAGCTTAGAGACTGGAATGAGGAACTGCAGGTAGCCAGAGAGCTGCCCATTGATAACACTCAGCTTAAGATCTACCGAGACAAGCTCATCTTCAAGACTCACACAGACTTTGTCCAGGCTGCTACACGATGTGCAGTGGCTATCGTAGATGGCTGTGTCCCTTCTCTCAACCCTGCAGAGGGAGAGAAACATCGTATGTACATGTGGAACAACATATTCTTCAGTTTGGCCTTTGACGGGAAGGATCATTACAAAGTGTTTGGTGGGGATGATGCCGCACAAGCAGCAGCTGCGGCAGACCTCCATGGGGTGGCTACCTATGAGAGGCTTGAGACAAAGGATCTGTACACTGTGGCCTCTGTACTGGTGGACTATAGAGGGTTTAGGGTGGTCTGTCAGTCACTTATCCCAGGTCTACTCCAGCGAGAGCAGGACCTCCCTGTGGTGTACGGCTCTATTGATGCTGGGAAGACCATTAACACTTACAAGAAGATAGAGGAGTTGTTAAAGAAATCAGCTACGGATCTACACATTAGGGAACACAAGCTACTGACAGAGAAAGGGGAGGAAGTAGTCTTACCGTCTTCATTAGAAGTGAAGGGTATCCATGGCAATGACAACCGTCACTATGTAATGGATCTTTTCCGTATCTTTCCCCCTGATGCCAACTATTCTGAACCGGATGAACTGGGAAGGTACAGGCATAAGCTAGCCACTCTCAGACCAGAACTCCTGGAGACTTTCCTCAGCTATCGGTATTTGTTATTCCTGAAGCTGGCCCGAGAGAAAGCCTGTGAGCTGAAAGTCATACAAGATCTTCAGAAGAGTATGGAGACCCAGTCCGAATCCAAAGAAGACTGTCCAATTAAATCATCAGCTAGCCAGGCAACTGAAGACTCTGCCAGTAATGGACCAATGGCCTCGGTCACCACCGACTCCCCCACCAGATCCACAGTAACTCCATCATCTGCCGATCCCTCACTGTTAGAACCACAGACCACAGACCAATCTTCATCCCTCTCTCTCCTCAATCAGGATGGTGAACCCCTGACCCAAAGTAGCTCATCGGTCTCTCCCTCTAGGAGAAAAAACACCGTCTCTGTTATTCCTCATGTCAGTTCAGGCCCGGCCAGCCTGGCTACACTATCAACCCTAGCCTCTACTACTGCATCGTCAGACTCGCTTAACCTGTTAATTCTCCCGTCAGACAACGAGGACAAGTTGCTTAGCGGCTGTAACGATTTGACCCAAACATCCCCTGAAGCTGTTGTACAGGTTCTAAGTGTCGCATCTCCCCCGTCCTCCATGGGAGTAACGGGAGGTGGGGAAGTGTTTCTTGTTGACGGTACGGAGATGCTGGCAGATGAGAAGGAAGTAGGCTCAGAGATCCCCTCAGGGGCTGATGAGGAGCTGGTGGGACCGGGTACAGCTACTGTAGAGGATTTGGACACATCAGAGCTAGTGAAGACCCATCCTGAGGTGATGGAAGCCCTGAGGGAGGCTGCAAGGGAGGCAGGGTCAACCAGTGTTGAGGACTTTGCCATTCAATTTAATGTAGACATCCTGGCACCTGGGGTCAGACATGGTGACTCTGAGGATGTCCTGGAGAGAGATCTAAAGTTGATAAAAGATGCAGCGTCCTTCTTGGTTGGCTCTGCTATCCCAAGATTGGTTCGGGACTGTGTCCAACTTGTGGTCTCTCCCTCGGACGGAGAGTCCCTCAAGCAGGTCATGCATGCCAGAGGGATCAACATGCGCTACCTAGGCAACGTGGCAAAGCTTGCCGCAACTAGAGAGGATCTTCATCATCTCCTGAGACTGTGTGTTGGTGAAATGATCCTCAGAATGGCCAAGCGAAAGATGAGAAAGTTGTTGCAGGATGGTAGGTCACGTCCCAACCTCCCTCCCTCTCTAAATTACCTCTCCTCCTTGGCAGTTCCTCTCCACAAGGTCTCTGAAGTTGTGGCTCACTTCCTGAACTGTCTAATGGGAGGAGACGGGGGGACGAGAACAGGAGATGAAGCCTCTCTTGTTACCAATGGACAGACTCGTAGAAAGCAGAGAAGGAAAAAATCCTCAAAGGGAACCACTCAAACTGGGTTTCCACACGCCAAGCTGTCAGCTGGAGGCTTGTGGTCTGATATAGTGGAGGAGATAGGCTGGTACTACCACTACGAAATTCAGTATGCAAGTCTGAGTGAGTTCTGCTGTAAGCTGAGTGTCCCTAAGTTATCACTCCTCAGAGAGCTATGCAGGAAGACAGGTGTTCAGGTGGTCCTTCGTGAGTATGACTTTTCCTCTCTTCCCGTGTTCACTGAGGATGACATTGCCAGTGTCTACCCTATTGTCAAGCACACAGACTTCAGGCCGGCTGAGCCCGTGGCATTGTTTGAAATGGCACAATCCAAGTTTGCCTCTGGCAACATTCGTGTGGCCCATGATCTGTTTGTGGAGGCAATGCAGCTGTTTATCCAGGTGTATGGTCCTATGCACGTCGACATTGCCTACTGCTATAGCTACCAGCAGAAGGCAGTATTGATCTTTGAGCGTGTCTTGGGTGTGGACCACCCTGAAACTGTCACCTCGTACATCAATCTAGCTCTCTACTGCCACGCTACCAATCAGACTTCAGCCGCCATCAGGCTAATGTATCGTGCTCGCTACCTCCTCTTACTTGTGTATGGAGAGAGCCATCCAGAGCTAGCTACCTGCGATAGCAACATTGCACTCATGTTGCTGGCAATGAGGGACTTTGAAAATGCTCTGTCTTTTTTACAGAGTGCTCTCGGAATTTATGAAAAATACTATGGGATGGAATCATTGCAGACGGCTGTCAGTCACCATCATATTGCCAGAGTACAGTCGTTCCTTGGTGACTTCCGTGCCGCCCTGCAGCATGAGAAAAGCACCTACTCCATCTACTTGAAGAAGCTGGGCCCAGAGCATGAACGTACAAAAGAGAGCTCAACGTGCCTACAGGAGCTCACAGGGAAGGCTGTCACCATGCAGAAGACGATCAATGAGATGACAGGGAAGGGGAGAGCCAGTGGAGCTAAAGTTAAGGTTGACCTGCCTGGTTCCTGGGGTGACGTAGTCAACCTCATGAATGGTAGCACAGACCACCATCCTCGACAGATGGCTAGAGGACAGAGGCAGACTCACGTGAGGACACATGTTGTTAGGAAACGAAGCAGGAACATTCAGAGACAACCAAATACTGCTCAGGACTAG

Transcript

ANN25786-RA

Protein

Uniprot

Uniprot term	Description
A0JMD0	Clustered mitochondria protein homolog OS=Danio rerio OX=7955 GN=cluh PE=2 SV=1
Q5SW19	Clustered mitochondria protein homolog OS=Mus musculus OX=10090 GN=Cluh PE=1 SV=2
O75153	Clustered mitochondria protein homolog OS=Homo sapiens OX=9606 GN=CLUH PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF15044	CLU_N	Mitochondrial function, CLU-N-term	Family	Interproscan
PF12807	eIF3_p135	Translation initiation factor eIF3 subunit 135	Family	Interproscan
PF11027	DUF2615	Protein of unknown function (DUF2615)	Family	Interproscan
PF13236	CLU	Clustered mitochondria	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR025697	Domain	CLU domain	Interproscan
IPR033646	Domain	CLU central domain	Interproscan
IPR028275	Domain	Clustered mitochondria protein, N-terminal	Interproscan
IPR020309	Family	Uncharacterised protein family, CD034/YQF4	Interproscan
IPR027523	Family	CLU domain containing protein	Interproscan
IPR023231	Homologous_superfamily	GSKIP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12601	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006996	Biological Process	organelle organization	Interproscan
GO:0048312	Biological Process	intracellular distribution of mitochondria	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03255	TIF31, CLU1; protein TIF31	-	Translation factors	ko03012	deepkoala