Gene detail

Detailed information of ANN25875-RA in Montipora grisea

Genomic Location: Scaffold_121__1_contigs__length_217638:143212...144231
NR annotation: RKU15528.1, polyribonucleotide nucleotidyltransferase [Candidatus Poribacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
B0THS2	Polyribonucleotide nucleotidyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) OX=498761 GN=pnp PE=3 SV=1
A5EXU0	Polyribonucleotide nucleotidyltransferase OS=Dichelobacter nodosus (strain VCS1703A) OX=246195 GN=pnp PE=3 SV=1
A0KND9	Polyribonucleotide nucleotidyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=pnp PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03725	RNase_PH_C	3' exoribonuclease family, domain 2	Domain	Interproscan
PF00013	KH_1	KH domain	Domain	Interproscan
PF00575	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015847	Domain	Exoribonuclease, phosphorolytic domain 2	Interproscan
IPR003029	Domain	S1 domain	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR012162	Family	Polyribonucleotide nucleotidyltransferase	Interproscan
IPR004087	Domain	K Homology domain	Interproscan
IPR027408	Homologous_superfamily	PNPase/RNase PH domain superfamily	Interproscan
IPR036345	Homologous_superfamily	Exoribonuclease, PH domain 2 superfamily	Interproscan
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000175	Molecular Function	3'-5'-RNA exonuclease activity	Interproscan
GO:0004654	Molecular Function	polyribonucleotide nucleotidyltransferase activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006401	Biological Process	RNA catabolic process	Interproscan
GO:0006402	Biological Process	mRNA catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02945	RP-S1, rpsA; small subunit ribosomal protein S1	-	Ribosome	ko03011	deepkoala