Gene detail

Detailed information of ANN25885-RA in Montipora grisea

Genomic Location: Scaffold_76__1_contigs__length_339008:16129...17052
NR annotation: MYC12935.1, hydroxymethylbilane synthase [Gemmatimonadota bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q3A009	Porphobilinogen deaminase OS=Syntrophotalea carbinolica (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=hemC PE=3 SV=1
Q65GK1	Porphobilinogen deaminase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=hemC PE=3 SV=1
A1AUE7	Porphobilinogen deaminase OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=hemC PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03900	Porphobil_deamC	Porphobilinogen deaminase, C-terminal domain	Domain	Interproscan
PF01379	Porphobil_deam	Porphobilinogen deaminase, dipyromethane cofactor binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022418	Domain	Porphobilinogen deaminase, C-terminal	Interproscan
IPR000860	Family	Porphobilinogen deaminase	Interproscan
IPR036803	Homologous_superfamily	Porphobilinogen deaminase, C-terminal domain superfamily	Interproscan
IPR022417	Domain	Porphobilinogen deaminase, N-terminal	Interproscan
IPR022419	Binding_site	Porphobilinogen deaminase, dipyrromethane cofactor binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11557	PORPHOBILINOGEN DEAMINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004418	Molecular Function	hydroxymethylbilane synthase activity	Interproscan
GO:0033014	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0018160	Biological Process	peptidyl-pyrromethane cofactor linkage	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006783	Biological Process	heme biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01749	hemC, HMBS; hydroxymethylbilane synthase	EC:2.5.1.61	Porphyrin metabolism	ko00860	deepkoala