Gene detail

Detailed information of ANN26074-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:33615108...33631876
NR annotation: XP_029193062.2, E3 ubiquitin-protein ligase MIB1-like [Acropora millepora]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26074-RA

ATGGAGTACGTCGGCTATAGAGTTGTCAGAGGACCAGACTGGAGGTGGGGAAAGCAAGATGGAGGCGAGGGACACGCGGGAACCGTGCGGAACTTCGAAAGTAACCAAGAAGTGGTCGTTGTTTGGGATAATGGTACTGCGGCAAACTATCGTTGCTCTGGCATTTACGACTTGAGAATTCTGGATAGCAGTCCCACAGGTATAAAACATGATGGTGGTATGTGCGATGGGTGCCGCATGCAGCCCATATATGGAATGAGATGGAAGTGTGCAGACTGCACAAATTATGACTTATGCAGTGTGTGTTACCATGGTGATAAACATCAGTTGCGCCACAGATTTTATAGGATCAATGGTCCCAATGCAGACAGCCCTGCACTTGTTGAAGCACGGAGAAAGAGCAAAAAAATCACAGCTAGAGGAATATTCCCAGGTGCGAGAGTAGTGCGTGGTGTGGACTGGCAGTGGGAAGATCAAGATGGTGGCCCTGGTCGTCGTGGCAAAGTGACTGAAATCCAAGATTGGAGTACAACAAGCCCTCGCAGTGCTGCTTATGTCTTATGGGATAATGGAGCGAAGAATCTATACAGACTTGGATTTGAGGGGATGGCTGACCTGAAAGTAATAAGCGATGCCAAAGGGGGCTCATTCTATAGAGACCACTTGCCTTTGCTGGGTGATACCCGGTCAGCCCGAGCAGCAGGTCAAGGTTTACAGATTGGAGATCAAGTCACTGTTGATTTGGATCTTGAGATTGTGCAGTCCCTACAGCATGGCCATGGAGGCTGGACAGATGGCATGTATGAGACTCTTACAACACCAGGAACTGTGGTTGGTATTGATGAAGATCATGACATCATGGTGTTATACCCAACTGGTAACAGGTGGACTTTTAACCCAGCTATTTTGACCAAAGTAAATAGCTCATCAGAGACGTCCGACAGTGTGCTCTCCCTCTCCTCCCCCACAATAACATCTCCCACAGTGGCTGTTCCCAATGCTGCAGCAGGAGCAGGTGCTGCGTCAGGGGCGGGGTCATCATCGCAGTTTGTTTTGGGAGACTTGGTGCGCATTAGTGAAGACATGGAAAAGGTCAAGCTCATGCAGAGAGGACATGGCGAGTGGGCTGAGGCAATGCTACCAACTCTTGGTAAGGTTGGCAGAGTGCAGCAGATTTATCATGACAATGACCTGAAGGTAGAAATCTGCGGAACGTCTTGGACCTACAATCCAGCTCTTGTAACTAAAGTGGCCTCTGGCACTGATTCGTCTTCACTTGGGGCTTCAGCTGGAGACTATTACAGTAACAATACAGTTGACTCAACTTTGTTTTCTGTTTGTCAACTTGAAGCTGAGAGACTGTCAGCCCTGCTAAAGAAGCTGTTTGAGACACATGTTCCAGGAGATGCAGTAGAAGAGCTGGTCAAGGCTGCTGCTAATGGCGATTCACAAAGAGTGGAAGAACTGCTTCTCAAGGAAGATGCAAACGTCAATGGTGTGTTTGCTGGACACACGGCCCTTCAAGCTGCCAGTCAAAACGGCCATGAAGAAACTGTCAGAGTTCTTATTCGATTTAATGTGGATTTGGAGGCTGAGGACAAAGATGGTGACCGTGCTATTCACCACGCTGCCTTTGGAGATGAGTCTGCAGTCGTGGAACAGCTGATCAAAGCCGGAAGTGACATGAACGCACGAAACAAACGCCGCCAGTCACCATTGCACGTGGCTGTTAATAAAGGACACACAGCTGTGGTGAAGAAACTTCTTGGATTGGGATGTCATCCCAGTCTACAGGATACCGAAGGAGACACCCCACTGCACGACGCCATTTCCAAGAAGCGGGATGACATGGTTACCATGTTGCTAGAGGTTAATGCTGATGTCACGGTGGCAAATAATAACGGTTTCAATGCACTGCACCATGCGGCTCTACGTGGAAACCCAAGTGCAATGCGTATCCTCCTTACCAAGCTTCCTCGGCCGTGGATTGTGAATGAGAAGAAGGATGATGGGTACACAGCTCTTCATCTGGCGGCGCTTAACAATCACGTGGAAGTGGCTGAGCTACTCGTCAAACAGGCAAAAGCGAATAAAGATGTACAGAACTCAAACTTGCAAACGCCACTTCATCTTGCAGTGGAGAGACAACACACTCAGATAGTTAGGCTTTTAGTTCGTGAAGGCGCCAAGTTGGACCTTACAGACAAGGATGGAGACACTCCCCTGCATGAATCCCTCAGGCATCACACACTGTCTCAGCTGCGTCAGTTACAGGACATGCAGGATGTCGGCAAGCTTCTCATGGGTTTGGGAACACAAGGTGCTGACAAGAAAAGCAGTGCATCAATCGCTTTGTTCCTGGCCGCTAATGGCGCAGATCTCAACATCAAGAACAAGAAAGGACAGACTCCCTTGGATCTGTGTCCTGATCCTAATCTGTGTAAAGCATTAGCCAAGTGTCACAAGGAGCGGGCCAGCGGAACTCAGAAAAACAACGCCAGCTCCATGCAGCTGGCAGACGTGGATGAGAATGAAGGACTGGAAGAGTGCATGGTGTGCTCTGACATGAAGCGTGACATGCTGTTCGGCCCGTGTGGTCACGTGGCCACGTGCTCTCTGTGCTCGTCACGTGTCAAGAAGTGTCTCATGTGCAAGGAGACTGTGCAGTCCAGAACTAAGATTGAAGAGTGTCTTGTCTGTTCAGAGAGGACCTCAAGAGTGCTGTTCAAACCTTGTGGACATATGGTCGCTTGCGAAAATTGTTCCACTCTGATGAAGAAATGTGTGCAATGTCGTAACGCCATTGACGAGACTGTGCCATTTATTGTCTGTTGCGGTGGAAGAGCCCCAGCTCCTTGTCAGTCGAAATCAAGTGGTAAACCAGAGATCAACCCTCAAGAGTTCACTCAGTTGCAGCAGCAGCTACAAGACATGAAAGAACAGGCGATGTGCCCAGTCTGCATGGACCGAAGGAAAAACCTTATATTCCTGTGCGGACACGGCGCATGTCAACTGTGCGGCGACAGAATGCAAGAGTGCCCCATGTGCCGCAAACCCGTGGAAAGAAGAATTCTGCTGTTTTAA

Transcript

ANN26074-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86YT6	E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens OX=9606 GN=MIB1 PE=1 SV=1
Q80SY4	E3 ubiquitin-protein ligase MIB1 OS=Mus musculus OX=10090 GN=Mib1 PE=1 SV=1
Q6GNY1	E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis OX=8355 GN=mib1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000489 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18346 all species →	SH3_15	Mind bomb SH3 repeat domain	Domain	Interproscan
PF06701 all species →	MIB_HERC2	Mib_herc2	Domain	Interproscan
PF13606 all species →	Ank_3	Ankyrin repeat	Repeat	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR040847 all species →	Domain	Mind bomb, SH3 repeat domain	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR010606 all species →	Domain	Mib-herc2	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR037252 all species →	Homologous_superfamily	Mib/herc2 domain superfamily	Interproscan
IPR042056 all species →	Domain	E3 ubiquitin-protein ligase MIB1/2, zinc finger, ZZ-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24202 all species →	E3 UBIQUITIN-PROTEIN LIGASE MIB2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10645	MIB; E3 ubiquitin-protein ligase mind-bomb	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.