Gene detail

Detailed information of ANN26085-RA in Leptoseris scabra

Genomic Location: Scaffold_2__1_contigs__length_39127999:33750705...33771786
NR annotation: CAH3120436.1, unnamed protein product [Porites lobata]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26085-RA

ATGATCACTGACAAGCATTGGTTTGATTTTATTTTGAAAGATTTCCCATTGTTACAAGCTCCAGGCAGTCAGGGTCACAGTCAATCAACAGTGGTGGACAGTAAGGCTGGAGAAGATATTGAACAAAGACTTGACTTTCCCCAACAACAGCCCAGTGGAGATACTAGTATGTTAGCTGATGAGGAAGACCAGGAGTTTATTTCACCAAGCCAAGGAAGTCTTGCTGCGGGGTTCCCTCCTCATTTAAACAGGCAAGATGGAGACTTAACTCCTACATCCAGTACAAATGCTTTGATTCCCAGTGACTACACTCCAGCGGCAAGTCTCTTGGCATGCAGCAAAGGTGGTGTCAAAAGGACCCCTCTTCGGCAAGTTCTTGATCCCAAACGAGTGCGCCAATCTGAAAGCCCCGATCCAGGACCCTCACGTCGGTCGCCCTCTCCTGACCAACTGGAAGCGGCCAATACTGTTGGTTGTCGCACCAGGAAGACATCAAGAGCGGCTGCAGATTACACTGTCCCTCCTGGTTACACCACCCTGGCTAATCTACAACCGGACACAACTGTCAACGTGTACGGGGTGGTGAAGCTGTTTAAACCAGCGTGGAAATGCCGCGGCACCGATATGTGTTCTGTGCTTATGTTGATGGACCCGACAGTGGCCGAATCCGGTGGGCTCGAGTGTGTCTCGTTCCAGCCGAACGTGTTCCGACTGCCGAATGTGCAGAAGGTCGGAGACATCGTACGACTTCACCGCATCAAGATTTCCCAGTACCAGGGGAGACTGCAAGCCAAGTCCTCGCGCGGTTTTTCCGCGGTCGTGTTTGACCGCGATACTGAGCTACCTGTCTCCGCCGAGATGGCTCGAGTTTCAAGCTCTACTTTTACACTGACTCAGAATGATAAAGAAACTATCGAGTGCTTGAAAAACTGGTGCGAGGTCCACCCTGTTCTGTTTCCTCCAAACAACTTTATAACCGTGTCCCAGATAAGCCCGGACTCTTACTTTGATCTCGTCTGTCAGGTTCTTGGTGTCGCTCTGCACCGTACTCTCGACTGTGTTGTCCTGTATGTTACCGATGGTACTCAACCCAGACATGACCTTCGAAACTGTGAAGGCGATGACTACAGCATGGTCGAACCTCTGAACAATCATTCAAGTGAGGACGATGATGTGATCTCTGTTTTCCTGTACGGTTCTCACGCGGAGGTGGCTCGCCTCCTTGCTAAAACGGGCGCATATATCATCCTACACAATGTACATTCTCAAGTGTTGAAGCCGGGTGGGTCTGTCTGCAGTGTCCTGGACGTGGTGAAGCCTTATTTGGAGTTATGCGTGCACAGGGGCACCGCTTTCGGGCGTGGTCTGTCTGTGCTGTCTTCGGATTCGCCGGAAGTGAAGCGGATCTCAGTGTTCGTTGGAGGGGCCTTGGATCGTAAAGCTGTTAAGAACTGGTCCGTACAAGTGGAGAACTATCTGCTGAAACTCGCCGAAGAAGGCTTGAAAACACATGAGCTACAGAAGTTGTACGATAGTGCAAATTACACTGTGGAAGAAAAGAGCGGTTCTGATACCATAAAGTCTGTGAAATCAAGGCTTGGAGACTACTTCGTCAAAAAGGAGACTACAGCCAGGAAAGTTGCAGAGGAAGTTGCAAGGCTTCATGATGCATTTTACACCAACAAAACACTACAAGAAATGGCAAAGGTCTCCACACTTCAGCAACTGGGTCCCAAATATTATTCAGACTCAGACTTAGTAGACACTCTACCAAAAGACATGGAGTTCAACACATTGTTTAAGCAGAAAGTGAGCCAAAGCCGGAGTTCAGTGAAGATATCAGATCAAGTTGACAGAAACAGTCCAAAGTTGATTGAAGCTGTGTTCTGGTCCTCAATGCTGGATAATGTTTTCAAGGAGAGTTTAAAGAATGATCCAGAACTTAGGACGTACCCAACACAGGAATGGTCGTTAAACTTTGCTGGCTTCCACATTGATTATGACCCCAGACTGAGGCCCTGGTATATTGGTGCCACATCGGGCCCTAAGGACATTGTTATCATTCTGGACTGTAGTCTGTCAATGGAAGGAAAAAGATTCCACATGGCTAAAGAAGTGGCCAAAACAGTACTAAATACGTTGACTAAGCAGGATTTTGTCAATGTCATCTGTGGCCATGAAAGCCATTGGGATGAGGTCGGAAAGTGGTTTGAATACAAAACTGAAGTGCTGAGCTGTCAACAGACCCGACTTGTGCCAGCCTCCACCTCTCACAGGAAAGACATGATAGAAAAGATTGATAATCTGAAGGCTGGGGGAACAAGTGAACTCAAGAAAGCTTTCAAGTTAGCGTTTGAGTTGCTGCAAGGCAATGCCAGAACTGGCTGTCAGAGCATCATCGTGTTTGCCACAGACGGAGTCGACAATGATGGGGACCCTGTGCGATGTGGCCCAGGGTACTACACCAGGAGCGGGTATGTACCAGGCCAGATCTGTAAGTACGACTGGAATGACGTGTGGGATGAAGTGCAGGCCAGGAACAGATATATGAGCCCCAGGACTCGAATCTTTTCTTACTTAACATCGGGTAACGGAGAAGGTGAAGAATTGCCTGGCAAGCTATCCTGTGACAATCAAGGCTACATGAAGAAACTAACGGATGAAGAGGACATTATATCTCAGATGCAGGATTATTACAGCTTTTTGGCGTCCAATACGATCAGCGTCAGCAATGTCACGTGGACATCTCCATATTTGGATGCGTCGGGCTTGGGACTCATGGTCACGGTAGCCATGCCTGTCATCAGTAAAATCACAAACAAAACAATAGGCGTGGTTGGAATCGATGCTACCTTGGAAGAGATCGAGAATATCTTGTTAAATGACCGGTGGGGCTCAGTGTACGCTTTTCTGGTAAATGAACGAGGAGAGACGATATTTCACCCGCTCTTACGACCAAGTACCGAGGACTTAGTCTGTTTTGGAGGCGACTTGTCTGGATACGGAGAGGAAAGACCCTTTGACAGAAAAGACAAAGTGTCAAGTTTTATTTTGCCAGAGATATTGGTGAAAATTGCTGGAATAAACAAAATCACCCGCTCTAAGGATTCGTGGGAGAAGAAGGCGATAACTCTTCCGTTTTCAAAGTGCTTTCCTGTGATTATCAAATGCCGTCTTGTCGTCGCCATTCACCACTAA

Transcript

ANN26085-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62597	Protection of telomeres protein 1 OS=Gallus gallus OX=9031 GN=POT1 PE=1 SV=1
Q9NUX5	Protection of telomeres protein 1 OS=Homo sapiens OX=9606 GN=POT1 PE=1 SV=1
Q95K48	Protection of telomeres protein 1 OS=Macaca fascicularis OX=9541 GN=POT1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007511 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02765 all species →	POT1	Telomeric single stranded DNA binding POT1/CDC13	Domain	Interproscan
PF13519 all species →	VWA_2	von Willebrand factor type A domain	Domain	Interproscan
PF16686 all species →	POT1PC	ssDNA-binding domain of telomere protection protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR011564 all species →	Domain	Telomeric single stranded DNA binding POT1/Cdc13	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR051173 all species →	Family	Voltage-dependent calcium channel subunit alpha-2/delta	Interproscan
IPR032042 all species →	Domain	Protection of telomeres protein 1, ssDNA-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10166 all species →	VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0000781 all species →	Cellular Component	chromosome, telomeric region	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005245 all species →	Molecular Function	voltage-gated calcium channel activity	Interproscan
GO:0005891 all species →	Cellular Component	voltage-gated calcium channel complex	Interproscan
GO:0043047 all species →	Molecular Function	single-stranded telomeric DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN26085-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.