Gene detail

Detailed information of ANN26104-RA in Montipora grisea

Genomic Location: Scaffold_44__1_contigs__length_586349:199196...201334
NR annotation: MXX37953.1, NAD-dependent DNA ligase LigA [Gemmatimonadota bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN26104-RA

ATGGCCCAAGACATTGCCCAACGCATGGCCGCGCTCGCGGCCGAGTTAGAAGAGCACCTCTACCGCTATCACGTCCTCGCCGCCCCCACCATTTCCGACCGAGAATTCGACCGCCTCCTCGCAGATCTGCAAGCCCTCGAAGCGGCGCACCCCGCGCTCGCACGGCCCGACTCACCCACCCAGCGCGTCGGCGGCGCACCGACCAGCGATTTTCCCACCGTCCGCCACGCCCAGCCCATGCTCAGCCTCGACAACAGCTACTCGCGCCAAGATGTGGAGGACTTCGACCGCCGCGTGCGCCAGGGCTTGCCCGACGAAGATCTCGAATACGTCTTCGAGCTAAAGATCGACGGCGTGGCCCTCAGCCTCGTGTACGCAGACAGCCTGCTCGTGCGCGCCGTCACCCGCGGCGACGGCGTCCAAGGCGACGACATCACGGCCAACGCCCGCACCATCCCCACCATTCCCCTCCGGCTGCGCCAACCCGCAATCAACTGCGAAATCCGCGGCGAGGTGTACATGGAAGACGGCGATTTCGCCCAGCTCAACGCCCAGCGCACAGCCGACGGCGAGCCCCTCTTCGCCAACCCGCGCAACTCGACAGCCGGCGCACTCAAGCTGCAAGATCCCAAGCTAGTCGCCAAGCGCGGCTTGCGCTTTTCTGCCTACTGGATGCACGCCGAAGGCGGCGGGCAAACGCGGCACAGCGAATGCCTCGACGCCCTGCGCGAATGGGGGTTAGCGGTCAATCCAGCGACTGCGTGCTGTGCCTCGCTGGAGGAGGTTTTCGCCCACTACGACCGATATGCTGCCACGCGTACGGCGCTCCCCTATCAAATCGATGGCGTGGTCGTCAAAGTCGATAGCCTCAGCCAGCAGCAGCGGCTGGGCAGTACGGCCAAAAGCCCGCGCTGGGCCATGGCGTACAAGTTCCCGGCCAGCCAAGTGCGCACCAAGCTCTTGGACATTGCCCTGCAAGTCGGGCGCACCGGCGTCCTGACCCCGGTCGCCATCCTAGCGCCGGTGTCCTTAGCTGGCTCAACCATCTCGCGCGCCACGCTCCACAACCTCGACGAGATCCGCCGCAAGGACATCCATATCAACGACACCGTGTTGCTGGAAAAGGGCGGCGATGTGATCCCCAAGGTCGTCGGCGTCGCCAGCAACGCCCGCGGCGACGATGCCGTAGCGTACCAGCTACCTACTCGCTGCCCCTCGTGCGCAGGCCCGCTGACGCCCGACCCGGAAGAGGTGGCCGTCCGCTGCGAAAATCCCGCCTGCCCGGCCCAACTGCGCCGCCGCCTAGAGCACTTTGCTTCGCGCAACGCCATGGATATCGAGGGCTTGGGGCCGGCTGTGGTCGAACAACTCGTAAAAAAAGGGCTGGTGCGGGATTTGGGCGATCTCTATAGCCTAGCGCTAGAGGCCCTCAGCGATCTAGAGAGAATGGGGGAAAAGTCCGCCGCAAACCTCCTCGCAAGCCTCGAGCGCAGCAAGGAGCAGCCTTTTGAGCGGGTGCTTTTCGCCCTTGGCATCCGCCACGTGGGCGCGACCGTCGCCCGCACCTTGGCCCAAGAGTTCCGCACCTTAGACGCCCTGCGCCAAGCCAGCCGCGAAAAACTCGAATCAATCCCCGAGATCGGCCCGATCATCGCCCGCAGCCTCTACGAAAGCCTCCACATCCGCCTTTACGCCTCCGAGATGAAGGGCGTACTCGACAAGCCGATCATCGCCCGCAGCCTCCACATCCGCCTCTGCGCCTCCGAGATGAAGGGCGTGCTCGACAAGCCAATCATCGCCCGCAGCGTCCGCGCTAGCCAGATGGAGGGCGTGCTCGGCAAGCTCCAAAAAGCCGGATTGCAGCTTGCTATGGCAGAAGAAGAGGCCGCTGCGCCGTCTCATTTCAGCGGCAAGACCGCGGTCATCACCGGCACCTTGGCGCACTACAGCCGCGCCGCGGCGGCCGCGCTGATTGAGCGCTTAGGCGGCAAGACCGCATCTAGCGTCAGCAAGAAAACCGACCTGCTCATAGCAGGCGAAAAAGCGGGGGCCAAACTGGCAAAAGCGCAGGCCCTCGGCGTCGAAGTGCTCGACGAAACGGCCTTTATCGCGCACCTAAAAGAGGCCGAGCTGGCCTAA

Transcript

ANN26104-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5L3B9	DNA ligase OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=ligA PE=3 SV=1
B1I551	DNA ligase OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=ligA PE=3 SV=1
O87703	DNA ligase OS=Geobacillus stearothermophilus OX=1422 GN=ligA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011504 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03120 all species →	DNA_ligase_OB	NAD-dependent DNA ligase OB-fold domain	Domain	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF01653 all species →	DNA_ligase_aden	NAD-dependent DNA ligase adenylation domain	Domain	Interproscan
PF12826 all species →	HHH_2	Helix-hairpin-helix motif	Motif	Interproscan
PF14520 all species →	HHH_5	Helix-hairpin-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003583 all species →	Domain	Helix-hairpin-helix DNA-binding motif, class 1	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR013839 all species →	Domain	NAD-dependent DNA ligase, adenylation	Interproscan
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR004150 all species →	Domain	NAD-dependent DNA ligase, OB-fold	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR033136 all species →	Conserved_site	NAD-dependent DNA ligase, conserved site	Interproscan
IPR001679 all species →	Family	NAD-dependent DNA ligase	Interproscan
IPR013840 all species →	Domain	NAD-dependent DNA ligase, N-terminal	Interproscan
IPR010994 all species →	Homologous_superfamily	RuvA domain 2-like	Interproscan
IPR041663 all species →	Domain	DisA/LigA, helix-hairpin-helix motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23389 all species →	CHROMOSOME TRANSMISSION FIDELITY FACTOR 18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003911 all species →	Molecular Function	DNA ligase (NAD+) activity	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006288 all species →	Biological Process	base-excision repair, DNA ligation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+)	EC:6.5.1.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.